Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01590 Arabidopsis thaliana HOM05D007681 ORTHO05D009734 3.4e-84 315.1 175 100.0
AL5G10680 Arabidopsis lyrata HOM05D007681 ORTHO05D009734 8.8e-72 273.9 179 83.8
Carub.0005s0053 Capsella rubella HOM05D007681 ORTHO05D009734 7.4e-71 270.8 180 83.9
CARHR144140 Cardamine hirsuta HOM05D007681 ORTHO05D009734 2.1e-65 252.7 179 78.8
Thhalv10005039m.g Eutrema salsugineum HOM05D007681 ORTHO05D009734 1.6e-60 236.5 179 75.4
BcaB07g30389 Brassica carinata HOM05D007681 ORTHO05D009734 1.5e-58 229.9 180 71.7
BcaC03g17055 Brassica carinata HOM05D007681 ORTHO05D009734 2.1e-57 226.1 181 72.4
A02p32170 Brassica napus HOM05D007681 ORTHO05D009734 4.7e-57 224.9 181 71.3
C02p49750 Brassica napus HOM05D007681 ORTHO05D009734 1.0e-56 223.8 181 71.3
Sp2g13030 Schrenkiella parvula HOM05D007681 ORTHO05D009734 1.0e-56 223.8 181 71.8
BolC2t11054H Brassica oleracea HOM05D007681 ORTHO05D009734 3.0e-56 222.2 178 70.8
BraA02t08231Z Brassica rapa HOM05D007681 ORTHO05D009734 3.0e-56 222.2 181 70.7
Aa31LG2G8310 Aethionema arabicum HOM05D007681 ORTHO05D009734 5.4e-45 184.9 179 64.2
Cpa.g.sc2.238 Carica papaya HOM05D007681 ORTHO05D009734 1.2e-28 130.6 175 50.9
THA.LOC104805073 Tarenaya hassleriana HOM05D007681 ORTHO05D009734 3.0e-27 125.9 177 48.6
Cfa014982 Carpinus fangiana HOM05D007681 ORTHO05D009734 2.5e-26 122.9 185 46.5
Gorai.002G176600 Gossypium raimondii HOM05D007681 ORTHO05D009734 1.2e-25 120.6 111 59.5
Gohir.1Z015700 Gossypium hirsutum HOM05D007681 ORTHO05D009734 1.6e-25 120.2 111 58.6
Gohir.A01G150154 Gossypium hirsutum HOM05D007681 ORTHO05D009734 1.6e-25 120.2 111 58.6
CiPaw.06G048600 Carya illinoinensis HOM05D007681 ORTHO05D009734 3.6e-25 119.0 178 44.4
Actinidia36647 Actinidia chinensis HOM05D007681 ORTHO05D009734 1.1e-24 117.5 165 44.2
Gohir.D01G143200 Gossypium hirsutum HOM05D007681 ORTHO05D009734 1.1e-24 117.5 111 58.6
Dinv28046 Davidia involucrata HOM05D007681 ORTHO05D009734 1.2e-23 114.0 111 53.2
Thecc.02G287600 Theobroma cacao HOM05D007681 ORTHO05D009734 1.2e-23 114.0 179 46.9
Ciclev10016943m.g Citrus clementina HOM05D007681 ORTHO05D009734 5.8e-23 111.7 179 41.9
Sed0010427 Sechium edule HOM05D007681 ORTHO05D009734 4.9e-22 108.6 120 47.5
CANSAT01G2988 Cannabis sativa HOM05D007681 ORTHO05D009734 6.4e-22 108.2 129 45.7
ECA233G2077 Erigeron canadensis HOM05D007681 ORTHO05D009734 1.4e-21 107.1 141 44.7
CsaV3_5G014700 Cucumis sativus L. HOM05D007681 ORTHO05D009734 3.2e-21 105.9 180 40.0
Lalb_Chr10g0095991 Lupinus albus HOM05D007681 ORTHO05D009734 3.2e-21 105.9 156 44.9
Glyma.07G166400 Glycine max HOM05D007681 ORTHO05D009734 4.1e-21 105.5 139 46.0
Hma1.2p1_0330F.1_g127440 Hydrangea macrophylla HOM05D007681 ORTHO05D009734 5.4e-21 105.1 112 50.9
Lsat_1_v5_gn_8_44280 Lactuca sativa HOM05D007681 ORTHO05D009734 9.2e-21 104.4 143 45.5
Lj2g0022739 Lotus japonicus HOM05D007681 ORTHO05D009734 9.2e-21 104.4 116 49.1
TWI77G0184 Tripterygium wilfordii HOM05D007681 ORTHO05D009734 1.2e-20 104.0 116 44.8
Ca_12590_v3 Cicer arietinum L. HOM05D007681 ORTHO05D009734 2.1e-20 103.2 157 43.9
PSO017G3157 Papaver somniferum HOM05D007681 ORTHO05D009734 2.7e-20 102.8 138 42.8
EL10Ac1g01492 Beta vulgaris HOM05D007681 ORTHO05D009734 3.5e-20 102.4 136 43.4
ClCG07G005970 Citrullus lanatus HOM05D007681 ORTHO05D009734 4.6e-20 102.1 134 45.5
Oeu063591.1 Olea europaea HOM05D007681 ORTHO05D009734 4.6e-20 102.1 170 40.6
Prupe.1G330200 Prunus persica HOM05D007681 ORTHO05D009734 4.6e-20 102.1 142 45.8
Lj5g0022624 Lotus japonicus HOM05D007681 ORTHO05D009734 6.0e-20 101.7 155 41.3
Nn3g18293 Nelumbo nucifera HOM05D007681 ORTHO05D009734 6.0e-20 101.7 109 48.6
PSO478G3571 Papaver somniferum HOM05D007681 ORTHO05D009734 6.0e-20 101.7 156 39.1
PGR102G0336 Punica granatum HOM05D007681 ORTHO05D009734 6.0e-20 101.7 177 40.7
TAR629G0584 Trochodendron aralioides HOM05D007681 ORTHO05D009734 6.0e-20 101.7 140 44.3
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 3.0e-19 99.4 109 53.2
Manes.15G131200 Manihot esculenta HOM05D007681 ORTHO05D009734 5.1e-19 98.6 159 42.1
TPR.G36897 Trifolium pratense HOM05D007681 ORTHO05D009734 5.1e-19 98.6 176 39.2
Phvul.003G022100 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 8.6e-19 97.8 112 46.4
Atru.chr11.647 Acer truncatum HOM05D007681 ORTHO05D009734 2.5e-18 96.3 161 41.0
Nitab4.5_0001343g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 3.3e-18 95.9 166 37.3
Eucgr.B02939 Eucalyptus grandis HOM05D007681 ORTHO05D009734 5.6e-18 95.1 167 36.5
FAN17G1502 Fragaria x ananassa HOM05D007681 ORTHO05D009734 7.3e-18 94.7 137 42.3
Migut.L00587 Erythranthe guttata HOM05D007681 ORTHO05D009734 1.2e-17 94.0 183 42.1
FvH4_4g34062 Fragaria vesca HOM05D007681 ORTHO05D009734 1.6e-17 93.6 139 42.4
MD13G1021700 Malus domestica HOM05D007681 ORTHO05D009734 2.1e-17 93.2 183 45.4
Psat6g044480 Pisum sativum HOM05D007681 ORTHO05D009734 2.8e-17 92.8 178 43.8
arahy.Tifrunner.gnm1.ann1.W0FD01 Arachis hypogaea HOM05D007681 ORTHO05D009734 4.7e-17 92.0 111 50.5
Medtr1g031740 Medicago truncatula HOM05D007681 ORTHO05D009734 4.7e-17 92.0 192 41.1
Nitab4.5_0012949g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 4.7e-17 92.0 177 34.5
FAN22G1679 Fragaria x ananassa HOM05D007681 ORTHO05D009734 6.2e-17 91.7 123 43.1
AUR62013520 Chenopodium quinoa HOM05D007681 ORTHO05D009734 8.1e-17 91.3 178 38.2
RcHm_v2.0_Chr4g0443571 Rosa chinensis HOM05D007681 ORTHO05D009734 1.1e-16 90.9 117 46.2
Sabra10G0080500 Salix brachista HOM05D007681 ORTHO05D009734 1.8e-16 90.1 177 36.7
PGSC0003DMG400015899 Solanum tuberosum HOM05D007681 ORTHO05D009734 1.8e-16 90.1 139 39.6
Aqoxy3G00048 Aquilegia oxysepala HOM05D007681 ORTHO05D009734 2.3e-16 89.7 132 42.4
MSTRG.7616 Avicennia marina HOM05D007681 ORTHO05D009734 2.3e-16 89.7 176 34.7
arahy.Tifrunner.gnm1.ann1.2VU2GF Arachis hypogaea HOM05D007681 ORTHO05D009734 3.1e-16 89.4 82 59.8
unitig_26.g8951 Utricularia gibba HOM05D007681 ORTHO05D009734 4.0e-16 89.0 133 38.3
Potri.010G110100 Populus trichocarpa HOM05D007681 ORTHO05D009734 5.2e-16 88.6 115 44.3
HanXRQChr12g0363581 Helianthus annuus HOM05D007681 ORTHO05D009734 6.8e-16 88.2 177 38.4
Solyc05g026570.3 Solanum lycopersicum HOM05D007681 ORTHO05D009734 6.8e-16 88.2 139 38.1
Sopen05g023100 Solanum pennellii HOM05D007681 ORTHO05D009734 6.8e-16 88.2 139 38.1
Rhsim09G0093700 Rhododendron simsii HOM05D007681 ORTHO05D009734 8.9e-16 87.8 104 48.1
AUR62026755 Chenopodium quinoa HOM05D007681 ORTHO05D009734 1.5e-15 87.0 190 35.8
Nitab4.5_0000018g0170 Nicotiana tabacum HOM05D007681 ORTHO05D009734 2.0e-15 86.7 119 40.3
Lj6A742G71 Lonicera japonica HOM05D007681 ORTHO05D009734 5.8e-15 85.1 91 52.7
GSVIVG01011705001 Vitis vinifera HOM05D007681 ORTHO05D009734 1.9e-13 80.1 149 39.6
Ah.01g006360 Amaranthus hybridus HOM05D007681 ORTHO05D009734 4.6e-12 75.5 125 38.4
Peaxi162Scf00376g00013 Petunia axillaris HOM05D007681 ORTHO05D009734 4.6e-12 75.5 137 35.8
Phvul.005G062000 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 4.6e-12 75.5 77 51.9
MBI16_g06252_MAGBIO Magnolia biondii HOM05D007681 ORTHO05D009734 1.1e-10 70.9 83 48.2
Os09g0306650 Oryza sativa ssp. japonica HOM05D007681 ORTHO05D009734 6.8e-08 61.6 110 35.5
MELO3C026423.2 Cucumis melo HOM05D007681 ORTHO05D009734 5.8e-07 58.5 71 40.8


User provided reference genes

Program Settings