Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01554 Arabidopsis thaliana HOM05D001704 ORTHO05D001605 8.5e-54 213.4 106 100.0
AL5G10570 Arabidopsis lyrata HOM05D001704 ORTHO05D001605 3.3e-29 131.7 139 57.6
CARHR144110 Cardamine hirsuta HOM05D001704 ORTHO05D001605 5.0e-22 107.8 142 51.4
AL5G10590 Arabidopsis lyrata HOM05D001704 ORTHO05D001605 3.3e-21 105.1 139 51.8
BolC7t43756H Brassica oleracea HOM05D001704 ORTHO05D001605 5.6e-21 104.4 140 49.3
BraA06t27306Z Brassica rapa HOM05D001704 ORTHO05D001605 1.4e-19 99.8 118 55.9
Aa31LG2G8350 Aethionema arabicum HOM05D001704 ORTHO05D001605 2.0e-18 95.9 138 44.9
A06p44320 Brassica napus HOM05D001704 ORTHO05D001605 5.8e-18 94.4 144 47.9
Thhalv10005108m.g Eutrema salsugineum HOM05D001704 ORTHO05D001605 5.8e-18 94.4 139 47.5
BcaC06g31293 Brassica carinata HOM05D001704 ORTHO05D001605 7.5e-18 94.0 136 47.8
BcaC06g34151 Brassica carinata HOM05D001704 ORTHO05D001605 3.7e-17 91.7 139 45.3
C07p32150 Brassica napus HOM05D001704 ORTHO05D001605 3.7e-17 91.7 139 45.3
BcaB07g30734 Brassica carinata HOM05D001704 ORTHO05D001605 9.2e-16 87.0 140 45.7
C09p30320 Brassica napus HOM05D001704 ORTHO05D001605 4.6e-15 84.7 139 44.6
A09p23480 Brassica napus HOM05D001704 ORTHO05D001605 6.0e-15 84.3 139 44.6
BraA09t37948Z Brassica rapa HOM05D001704 ORTHO05D001605 6.0e-15 84.3 139 44.6
THA.LOC104823786 Tarenaya hassleriana HOM05D001704 ORTHO05D001605 1.7e-14 82.8 141 45.4
BcaC04g21568 Brassica carinata HOM05D001704 ORTHO05D001605 6.8e-11 70.9 129 41.9
Cpa.g.sc2.241 Carica papaya HOM05D001704 ORTHO05D001605 1.5e-10 69.7 142 38.7
THA.LOC104823002 Tarenaya hassleriana HOM05D001704 ORTHO05D001605 5.8e-10 67.8 145 36.6
arahy.Tifrunner.gnm1.ann1.61D68N Arachis hypogaea HOM05D001704 ORTHO05D001605 2.2e-09 65.9 140 35.7
arahy.Tifrunner.gnm1.ann1.652ZDV Arachis hypogaea HOM05D001704 ORTHO05D001605 2.2e-09 65.9 140 35.7
Duzib248G0176 Durio zibethinus HOM05D001704 ORTHO05D001605 2.9e-09 65.5 141 36.2
AL2G30232 Arabidopsis lyrata HOM05D001704 ORTHO05D001605 6.4e-09 64.3 143 36.4
CARHR064040 Cardamine hirsuta HOM05D001704 ORTHO05D001605 8.4e-09 63.9 142 35.9
Carub.0002s1752 Capsella rubella HOM05D001704 ORTHO05D001605 1.1e-08 63.5 140 35.0
COL.COLO4_13107 Corchorus olitorius HOM05D001704 ORTHO05D001605 1.1e-08 63.5 136 36.0
FAN17G1643 Fragaria x ananassa HOM05D001704 ORTHO05D001605 1.9e-08 62.8 135 33.3
Duzib251G0756 Durio zibethinus HOM05D001704 ORTHO05D001605 3.2e-08 62.0 141 34.8
Oeu018606.1 Olea europaea HOM05D001704 ORTHO05D001605 3.2e-08 62.0 135 36.3
Atru.chr11.666 Acer truncatum HOM05D001704 ORTHO05D001605 4.1e-08 61.6 137 34.3
AT1G70780 Arabidopsis thaliana HOM05D001704 ORTHO05D001605 4.1e-08 61.6 143 35.7
Sp5g25960 Schrenkiella parvula HOM05D001704 ORTHO05D001605 5.4e-08 61.2 143 35.0
FAN07G0482 Fragaria x ananassa HOM05D001704 ORTHO05D001605 7.1e-08 60.8 135 33.3
FAN22G1519 Fragaria x ananassa HOM05D001704 ORTHO05D001605 7.1e-08 60.8 135 33.3
Lj6g0011523 Lotus japonicus HOM05D001704 ORTHO05D001605 7.1e-08 60.8 132 37.1
Sed0006459 Sechium edule HOM05D001704 ORTHO05D001605 7.1e-08 60.8 143 35.0
Eucgr.B02935 Eucalyptus grandis HOM05D001704 ORTHO05D001605 9.2e-08 60.5 137 35.0
FvH4_4g32830 Fragaria vesca HOM05D001704 ORTHO05D001605 9.2e-08 60.5 135 33.3
FAN12G4248 Fragaria x ananassa HOM05D001704 ORTHO05D001605 9.2e-08 60.5 135 33.3
MSTRG.13601 Avicennia marina HOM05D001704 ORTHO05D001605 1.2e-07 60.1 134 34.3
SGA_v2.0_scaffold257G45703 Striga asiatica HOM05D001704 ORTHO05D001605 1.2e-07 60.1 138 35.5
Thhalv10019542m.g Eutrema salsugineum HOM05D001704 ORTHO05D001605 1.6e-07 59.7 144 34.7
MD16G1023400 Malus domestica HOM05D001704 ORTHO05D001605 1.6e-07 59.7 136 35.3
THA.LOC104824136 Tarenaya hassleriana HOM05D001704 ORTHO05D001605 1.6e-07 59.7 141 36.9
GSVIVG01011711001 Vitis vinifera HOM05D001704 ORTHO05D001605 1.6e-07 59.7 136 35.3
Gohir.A12G151000 Gossypium hirsutum HOM05D001704 ORTHO05D001605 3.5e-07 58.5 140 35.0
Gohir.D01G143600 Gossypium hirsutum HOM05D001704 ORTHO05D001605 3.5e-07 58.5 141 32.6
Prupe.1G329500 Prunus persica HOM05D001704 ORTHO05D001605 3.5e-07 58.5 136 33.1
RcHm_v2.0_Chr4g0441841 Rosa chinensis HOM05D001704 ORTHO05D001605 3.5e-07 58.5 132 33.3
Thecc.02G287000 Theobroma cacao HOM05D001704 ORTHO05D001605 3.5e-07 58.5 54 53.7
Glyma.18G039900 Glycine max HOM05D001704 ORTHO05D001605 4.6e-07 58.2 125 36.0
Gohir.A01G150300 Gossypium hirsutum HOM05D001704 ORTHO05D001605 4.6e-07 58.2 141 32.6
Gorai.002G177100 Gossypium raimondii HOM05D001704 ORTHO05D001605 4.6e-07 58.2 141 32.6
MD17G1260800 Malus domestica HOM05D001704 ORTHO05D001605 4.6e-07 58.2 141 31.2
Ca_12584_v3 Cicer arietinum L. HOM05D001704 ORTHO05D001605 7.8e-07 57.4 141 31.9
Ca_12593_v3 Cicer arietinum L. HOM05D001704 ORTHO05D001605 7.8e-07 57.4 141 31.9
Oeu062655.1 Olea europaea HOM05D001704 ORTHO05D001605 7.8e-07 57.4 130 34.6
Gohir.D12G154800 Gossypium hirsutum HOM05D001704 ORTHO05D001605 1.0e-06 57.0 139 33.1
Gorai.008G167200 Gossypium raimondii HOM05D001704 ORTHO05D001605 1.0e-06 57.0 139 33.1
HanXRQChr17g0566781 Helianthus annuus HOM05D001704 ORTHO05D001605 1.0e-06 57.0 136 31.6
Lsat_1_v5_gn_4_13761 Lactuca sativa HOM05D001704 ORTHO05D001605 1.0e-06 57.0 139 33.1
Eucgr.J01592 Eucalyptus grandis HOM05D001704 ORTHO05D001605 1.3e-06 56.6 136 31.6
TAR622G0729 Trochodendron aralioides HOM05D001704 ORTHO05D001605 1.3e-06 56.6 134 30.6
Migut.E00444 Erythranthe guttata HOM05D001704 ORTHO05D001605 1.7e-06 56.2 134 33.6
PGR102G0917 Punica granatum HOM05D001704 ORTHO05D001605 1.7e-06 56.2 132 31.1
SalBow2G2638 Salvia bowleyana HOM05D001704 ORTHO05D001605 1.7e-06 56.2 134 32.8
GSVIVG01030810001 Vitis vinifera HOM05D001704 ORTHO05D001605 1.7e-06 56.2 144 34.0
Ca_18177_v3 Cicer arietinum L. HOM05D001704 ORTHO05D001605 2.3e-06 55.8 135 32.6
Nn4g24237 Nelumbo nucifera HOM05D001704 ORTHO05D001605 2.3e-06 55.8 146 32.9
Psat7g082040 Pisum sativum HOM05D001704 ORTHO05D001605 2.3e-06 55.8 138 32.6
TPR.G14057 Trifolium pratense HOM05D001704 ORTHO05D001605 2.3e-06 55.8 135 29.6
TWI74G1135 Tripterygium wilfordii HOM05D001704 ORTHO05D001605 2.3e-06 55.8 138 37.0
TAR629G2235 Trochodendron aralioides HOM05D001704 ORTHO05D001605 2.3e-06 55.8 135 31.1
BcaC08g45803 Brassica carinata HOM05D001704 ORTHO05D001605 3.0e-06 55.5 143 34.3
Lalb_Chr12g0206841 Lupinus albus HOM05D001704 ORTHO05D001605 3.0e-06 55.5 136 33.1
Lalb_Chr18g0053411 Lupinus albus HOM05D001704 ORTHO05D001605 3.0e-06 55.5 138 32.6
Phvul.001G230600 Phaseolus vulgaris HOM05D001704 ORTHO05D001605 3.0e-06 55.5 143 33.6
BcaB03g15558 Brassica carinata HOM05D001704 ORTHO05D001605 3.9e-06 55.1 143 33.6
MELO3C005301.2 Cucumis melo HOM05D001704 ORTHO05D001605 3.9e-06 55.1 142 33.8
Sc14g0006270 Simmondsia chinensis HOM05D001704 ORTHO05D001605 3.9e-06 55.1 137 32.1
Sc14g0007030 Simmondsia chinensis HOM05D001704 ORTHO05D001605 3.9e-06 55.1 137 32.1
SGA_v2.0_scaffold39G15200 Striga asiatica HOM05D001704 ORTHO05D001605 3.9e-06 55.1 139 34.5
TWI53G1579 Tripterygium wilfordii HOM05D001704 ORTHO05D001605 3.9e-06 55.1 139 33.1
AL7G42120 Arabidopsis lyrata HOM05D001704 ORTHO05D001605 5.1e-06 54.7 132 31.8
CSS0017225 Camellia sinensis var. sinensis HOM05D001704 ORTHO05D001605 5.1e-06 54.7 136 32.4
Cc11_g08310 Coffea canephora HOM05D001704 ORTHO05D001605 5.1e-06 54.7 55 50.9
Hma1.2p1_0158F.1_g070320 Hydrangea macrophylla HOM05D001704 ORTHO05D001605 5.1e-06 54.7 114 38.6
Actinidia15929 Actinidia chinensis HOM05D001704 ORTHO05D001605 6.6e-06 54.3 141 29.8
BraA07t30730Z Brassica rapa HOM05D001704 ORTHO05D001605 6.6e-06 54.3 145 33.1
CsaV3_5G028370 Cucumis sativus L. HOM05D001704 ORTHO05D001605 6.6e-06 54.3 142 33.1
ECA233G0219 Erigeron canadensis HOM05D001704 ORTHO05D001605 6.6e-06 54.3 137 33.6
BcaC08g46509 Brassica carinata HOM05D001704 ORTHO05D001605 8.6e-06 53.9 140 33.6
C06p44870 Brassica napus HOM05D001704 ORTHO05D001605 8.6e-06 53.9 140 33.6
BraA07t31280Z Brassica rapa HOM05D001704 ORTHO05D001605 8.6e-06 53.9 140 33.6
DCAR_030235 Daucus carota HOM05D001704 ORTHO05D001605 8.6e-06 53.9 135 31.9
Medtr3g065960 Medicago truncatula HOM05D001704 ORTHO05D001605 8.6e-06 53.9 136 31.6


User provided reference genes

Program Settings