Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.0e-166 589.0 284 100.0
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.1e-160 568.9 285 96.1
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 2.9e-157 558.5 284 93.7
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.1e-156 556.6 284 93.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 8.7e-154 547.0 281 91.1
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.9e-153 545.8 281 91.5
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-148 529.6 280 90.4
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.4e-148 529.6 280 90.4
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.4e-148 529.6 280 89.6
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.9e-148 529.3 288 87.2
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 4.2e-148 528.1 280 89.3
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 4.2e-148 528.1 280 89.3
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 7.1e-148 527.3 280 89.3
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.7e-136 489.6 281 81.1
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 2.1e-131 472.6 281 77.6
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 7.9e-131 470.7 282 75.9
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.0e-130 470.3 282 76.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 3.3e-129 465.3 282 75.5
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.3e-128 463.4 281 74.7
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.8e-128 462.2 282 75.5
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 8.2e-128 460.7 281 73.3
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.1e-127 460.3 281 74.7
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-127 460.3 282 74.5
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.1e-127 460.3 280 75.0
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 1.8e-127 459.5 280 73.9
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 5.3e-127 458.0 282 74.5
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 5.3e-127 458.0 282 74.5
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.3e-127 458.0 282 74.5
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.2e-126 456.8 278 75.2
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.0e-126 456.1 282 73.8
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.6e-126 455.7 281 74.0
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 2.6e-126 455.7 281 73.7
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 3.5e-126 455.3 280 74.3
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 3.5e-126 455.3 280 73.6
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 3.5e-126 455.3 281 73.0
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 74.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 4.5e-126 454.9 282 74.1
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 74.4
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 75.4
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 7.7e-126 454.1 278 74.8
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.0e-125 453.8 281 74.4
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.7e-125 453.0 269 76.6
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 2.2e-125 452.6 281 74.7
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.9e-125 452.2 282 73.4
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.9e-125 452.2 262 82.4
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 8.5e-125 450.7 262 81.7
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 8.5e-125 450.7 281 74.0
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.1e-124 450.3 281 73.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.5e-124 449.9 278 74.5
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.9e-124 449.5 280 72.9
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 3.2e-124 448.7 280 73.2
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 7.2e-124 447.6 281 74.7
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 1.2e-123 446.8 278 73.7
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.2e-123 446.8 282 74.1
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 1.2e-123 446.8 282 72.0
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 72.2
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 74.4
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 74.0
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 2.1e-123 446.0 281 74.0
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.7e-123 445.7 278 73.0
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 6.1e-123 444.5 282 72.3
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 8.0e-123 444.1 281 74.0
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.8e-122 443.0 280 72.9
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 2.3e-122 442.6 280 72.1
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 1.1e-121 440.3 280 71.1
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.5e-121 439.9 281 73.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 1.5e-121 439.9 286 72.7
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.0e-121 439.5 281 73.0
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 2.6e-121 439.1 279 72.4
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 3.3e-121 438.7 281 73.0
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 3.3e-121 438.7 279 72.0
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.4e-121 438.3 279 72.0
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.3e-120 436.8 286 72.4
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.2e-120 436.0 281 69.4
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 3.7e-120 435.3 281 70.5
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 3.7e-120 435.3 270 74.4
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.7e-120 435.3 276 72.5
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 6.3e-120 434.5 281 71.2
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.3e-119 431.4 281 71.9
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 4.5e-118 428.3 311 65.6
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 4.5e-118 428.3 281 71.9
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.0e-117 427.2 268 73.1
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.2e-117 426.0 312 66.0
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.1e-116 423.7 270 73.3
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.2e-116 421.0 277 71.8
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 7.2e-116 421.0 282 70.6
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 9.4e-116 420.6 274 71.9
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.2e-113 413.7 281 69.8
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 4.4e-113 411.8 248 80.6
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 5.7e-113 411.4 279 66.7
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.8e-112 409.1 269 69.5
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 3.7e-112 408.7 282 69.5
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 4.8e-112 408.3 250 74.8
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 4.8e-112 408.3 248 75.0
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.1e-111 405.6 281 68.0
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.1e-111 405.6 281 68.0
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.2e-109 399.4 263 72.2
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 5.5e-108 394.8 276 65.6
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 7.2e-108 394.4 296 63.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 8.0e-107 391.0 240 75.8
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 8.0e-107 391.0 276 64.5
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 5.7e-105 384.8 263 65.8
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.6e-102 376.7 236 74.2
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 2.3e-101 372.9 263 65.0
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 7.0e-95 351.3 285 58.2
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 5.9e-94 348.2 279 58.8
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.0e-90 337.4 421 44.9
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.0e-89 333.2 280 57.5
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.7e-88 328.9 190 76.8
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.1e-84 317.4 420 43.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 4.3e-84 315.5 266 57.9
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.3e-80 303.9 265 57.0
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 6.2e-75 285.0 281 48.4
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 4.0e-74 282.3 249 61.8
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.6e-73 279.6 167 71.3
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.7e-72 276.9 167 70.7
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.1e-71 274.2 175 68.6
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.4e-71 273.9 181 65.7
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.5e-70 269.2 306 46.7
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 4.3e-68 262.3 144 78.5
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 5.6e-68 261.9 248 59.7
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 5.8e-65 251.9 295 44.7
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 3.9e-61 239.2 295 43.7
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.3e-59 234.2 159 66.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.1e-55 218.4 135 75.6
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 3.9e-53 212.6 142 70.4
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.3e-52 209.5 145 61.4
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-41 174.5 221 40.7
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 4.5e-41 172.6 98 75.5
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 6.0e-38 162.2 110 69.1
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 4.3e-28 129.4 71 74.6
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 5.7e-28 129.0 81 69.1
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.7e-24 117.5 72 65.3
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.7e-24 117.5 72 65.3
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.9e-23 114.0 92 62.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.9e-23 114.0 75 72.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.9e-23 114.0 76 71.1
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 7.2e-23 112.1 80 65.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.5e-20 104.4 80 62.5
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.8e-13 80.9 87 49.4
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.5e-12 77.8 52 67.3
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 2.6e-12 77.0 55 70.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.0e-08 65.1 169 29.0
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-08 65.1 98 41.8
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 7.2e-07 58.9 50 62.0


User provided reference genes

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