Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.5e-187 658.7 341 100.0
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 7.5e-176 620.5 343 95.6
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 3.6e-170 601.7 348 92.2
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.6e-162 576.2 352 88.4
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.4e-158 563.1 350 86.9
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.4e-158 562.4 348 87.1
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 2.4e-158 562.4 343 88.0
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.1e-158 561.6 349 87.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.6e-157 559.7 353 86.1
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.7e-157 558.9 354 86.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 5.9e-157 557.8 352 86.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 5.9e-157 557.8 354 86.2
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.0e-156 557.0 353 85.8
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.9e-156 555.4 355 85.9
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 4.3e-155 551.6 350 86.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 7.3e-155 550.8 350 86.0
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-154 550.1 352 85.2
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.4e-145 520.0 352 83.2
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 1.3e-143 513.5 326 85.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.6e-141 506.5 366 77.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.4e-128 462.2 360 71.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.1e-126 457.2 359 71.6
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.4e-126 456.1 360 71.4
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 3.2e-126 455.7 360 71.4
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 7.1e-126 454.5 360 71.1
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.1e-125 453.0 349 71.9
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 2.1e-125 453.0 362 71.0
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.5e-125 452.2 317 78.2
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 7.8e-125 451.1 361 71.2
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.7e-124 449.9 313 76.7
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.3e-124 449.5 344 72.4
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.3e-124 449.5 299 81.6
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 3.9e-124 448.7 338 71.3
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 5.1e-124 448.4 334 74.6
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 6.6e-124 448.0 351 71.5
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.6e-124 448.0 350 71.7
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.6e-124 448.0 351 71.5
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.6e-124 448.0 351 71.5
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 8.6e-124 447.6 354 71.2
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.1e-123 447.2 361 71.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.5e-123 446.0 360 71.1
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 4.3e-123 445.3 307 78.2
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 7.3e-123 444.5 334 72.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 7.3e-123 444.5 345 72.2
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 9.6e-123 444.1 280 82.9
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 9.6e-123 444.1 273 83.5
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.1e-122 443.0 353 71.1
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.6e-122 442.2 354 70.9
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 4.7e-122 441.8 320 75.6
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.2e-122 441.4 315 76.2
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 6.2e-122 441.4 346 70.2
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 8.1e-122 441.0 334 71.9
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 8.1e-122 441.0 316 75.3
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 8.1e-122 441.0 346 71.1
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.1e-122 441.0 293 79.5
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.1e-121 440.7 362 68.2
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.1e-121 440.7 295 81.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.1e-121 440.7 287 81.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.1e-121 440.7 314 76.1
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 2.4e-121 439.5 312 74.4
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 3.1e-121 439.1 278 82.0
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.1e-121 439.1 275 83.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 4.0e-121 438.7 279 82.4
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 5.2e-121 438.3 346 70.2
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 6.8e-121 438.0 302 77.5
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 8.9e-121 437.6 275 82.2
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.2e-120 437.2 272 84.2
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.5e-120 436.8 291 79.7
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.5e-120 436.8 313 71.9
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 2.0e-120 436.4 362 69.1
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.6e-120 436.0 346 69.7
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 4.4e-120 435.3 362 69.1
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 5.8e-120 434.9 279 81.0
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 5.8e-120 434.9 315 74.9
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 9.9e-120 434.1 286 78.7
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.3e-119 433.7 287 79.1
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.3e-119 433.7 287 79.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.7e-119 433.3 297 79.5
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.9e-119 432.6 319 72.1
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 2.9e-119 432.6 333 70.6
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 3.8e-119 432.2 325 72.9
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 8.4e-119 431.0 349 68.8
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 8.4e-119 431.0 275 82.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 8.4e-119 431.0 275 82.2
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.1e-118 430.6 317 71.6
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.1e-118 430.6 317 71.6
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.1e-118 430.6 345 68.4
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.4e-118 430.3 257 85.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.4e-118 430.3 293 79.2
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.9e-118 429.9 297 76.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.2e-118 429.1 276 81.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 3.2e-118 429.1 280 80.4
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 4.2e-118 428.7 321 71.7
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 5.4e-118 428.3 315 74.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 9.3e-118 427.6 282 80.5
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.6e-117 426.8 279 81.0
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.1e-117 426.4 364 67.3
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 3.5e-117 425.6 279 80.6
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.6e-117 425.2 315 73.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 6.0e-117 424.9 269 82.5
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 6.0e-117 424.9 237 91.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 6.0e-117 424.9 346 69.7
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 7.8e-117 424.5 316 73.1
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.0e-116 424.1 257 84.4
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.0e-116 424.1 279 81.0
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.0e-116 424.1 279 80.3
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.3e-116 423.7 280 80.0
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.3e-116 422.9 257 82.9
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.0e-116 422.5 318 71.4
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 8.7e-116 421.0 278 79.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 8.7e-116 421.0 373 64.3
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.3e-115 419.1 255 82.0
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.3e-115 418.7 274 79.6
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 5.6e-115 418.3 279 76.7
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.3e-114 417.2 285 76.5
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.1e-114 416.4 361 67.6
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 2.1e-114 416.4 253 83.8
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 6.9e-113 411.4 292 77.4
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 6.9e-113 411.4 359 65.7
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.9e-111 405.2 290 73.8
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.6e-109 400.2 314 69.1
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.7e-109 399.4 377 61.8
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.7e-109 399.4 295 73.9
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 2.3e-108 396.4 345 65.2
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.0e-108 396.0 242 82.6
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.9e-108 395.6 273 77.3
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 5.1e-108 395.2 225 89.3
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 5.1e-108 395.2 273 76.6
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 5.1e-108 395.2 251 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 2.8e-106 389.4 277 74.7
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.3e-105 385.2 331 64.4
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 9.0e-105 384.4 257 76.3
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.0e-104 383.3 254 77.2
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.2e-103 379.8 249 78.7
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.3e-98 364.0 268 70.1
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.1e-94 350.9 281 64.8
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 6.0e-93 345.1 286 66.4
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 5.1e-92 342.0 248 71.4
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.3e-90 337.4 276 64.5
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.3e-87 327.4 214 79.0
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.0e-76 291.2 323 56.0
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 4.5e-72 275.8 186 77.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 6.5e-71 271.9 191 78.0
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 6.5e-71 271.9 156 90.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 3.2e-70 269.6 156 89.7
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.3e-63 247.7 176 75.6
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 4.5e-48 196.1 108 94.4
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 5.9e-40 169.1 120 76.7
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.7e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.0e-37 158.7 99 82.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.9e-34 149.4 112 70.5
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 9.5e-30 135.2 238 45.0
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 4.3e-22 109.8 64 92.2
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 8.9e-20 102.1 61 85.2


User provided reference genes

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