Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.8e-33 144.1 63 100.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 3.7e-28 127.5 61 85.2
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 8.1e-28 126.3 60 85.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-27 125.9 60 85.0
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.1e-27 125.9 60 85.0
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-27 125.6 59 88.1
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.8e-27 125.2 61 83.6
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.8e-27 125.2 59 88.1
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 3.1e-27 124.4 59 86.4
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 3.1e-27 124.4 59 86.4
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.0e-27 124.0 61 83.6
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.0e-27 124.0 61 83.6
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.0e-27 124.0 61 82.0
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.0e-27 124.0 60 86.7
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 6.9e-27 123.2 59 84.7
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 6.9e-27 123.2 59 84.7
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 6.9e-27 123.2 59 84.7
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.9e-27 123.2 61 82.0
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 6.9e-27 123.2 61 85.2
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 6.9e-27 123.2 61 85.2
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.2e-26 122.5 59 83.1
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-26 122.5 60 86.7
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.2e-26 122.5 59 86.4
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.5e-26 122.1 59 83.1
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.5e-26 122.1 59 83.1
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.0e-26 121.7 61 82.0
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.0e-26 121.7 61 82.0
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.0e-26 121.7 61 80.3
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.6e-26 121.3 59 84.7
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.6e-26 121.3 59 84.7
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 2.6e-26 121.3 61 80.3
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.4e-26 120.9 61 80.3
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 4.5e-26 120.6 59 84.7
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 5.8e-26 120.2 59 86.4
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 7.6e-26 119.8 59 84.7
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.0e-25 119.4 61 80.3
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 86.4
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 81.4
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 78.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.0e-25 119.4 59 84.7
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.0e-25 119.4 59 83.1
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 1.0e-25 119.4 61 82.0
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.3e-25 119.0 61 78.7
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.3e-25 119.0 62 79.0
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.3e-25 119.0 61 78.7
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.3e-25 119.0 62 79.0
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.7e-25 118.6 59 83.1
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.7e-25 118.6 61 80.3
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.7e-25 118.6 59 81.4
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.7e-25 118.6 61 80.3
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.7e-25 118.6 61 78.7
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.2e-25 118.2 61 78.7
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 2.9e-25 117.9 61 77.0
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.8e-25 117.5 61 80.3
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 3.8e-25 117.5 61 78.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.8e-25 117.5 59 81.4
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.8e-25 117.5 59 81.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 3.8e-25 117.5 61 78.7
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 3.8e-25 117.5 59 83.1
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.8e-25 117.5 61 78.7
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 4.9e-25 117.1 59 79.7
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 4.9e-25 117.1 59 79.7
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 4.9e-25 117.1 59 79.7
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 6.5e-25 116.7 61 77.0
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.5e-25 116.7 59 81.4
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 6.5e-25 116.7 61 75.4
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 78.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 78.0
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 8.4e-25 116.3 61 78.7
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.4e-25 116.3 61 78.7
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.4e-25 116.3 61 78.7
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 8.4e-25 116.3 61 78.7
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 8.4e-25 116.3 59 79.7
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 1.1e-24 115.9 61 77.0
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-24 115.9 61 78.7
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 1.1e-24 115.9 59 81.4
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.4e-24 115.5 61 78.7
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 1.4e-24 115.5 61 77.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.4e-24 115.5 61 75.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.9e-24 115.2 59 81.4
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.9e-24 115.2 56 85.7
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.9e-24 115.2 56 85.7
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.9e-24 115.2 56 85.7
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 1.9e-24 115.2 60 80.0
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 2.5e-24 114.8 61 75.4
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 3.2e-24 114.4 61 77.0
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.2e-24 114.4 58 81.0
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.2e-24 114.0 61 77.0
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.5e-24 113.6 62 79.0
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 5.5e-24 113.6 61 75.4
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 5.5e-24 113.6 61 73.8
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.5e-24 113.6 59 79.7
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 7.1e-24 113.2 61 73.8
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.1e-24 113.2 61 77.0
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 7.1e-24 113.2 62 74.2
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 7.1e-24 113.2 61 75.4
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 9.3e-24 112.8 61 75.4
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.3e-24 112.8 61 75.4
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 9.3e-24 112.8 61 78.7
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.2e-23 112.5 61 75.4
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.2e-23 112.5 61 70.5
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.6e-23 112.1 61 75.4
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.6e-23 112.1 61 73.8
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.1e-23 111.7 60 80.0
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.1e-23 111.7 61 75.4
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.1e-23 111.7 61 73.8
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.1e-23 111.7 60 75.0
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 2.7e-23 111.3 60 78.3
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 2.7e-23 111.3 61 72.1
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 2.7e-23 111.3 59 76.3
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.5e-23 110.9 61 73.8
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.5e-23 110.9 61 73.8
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 4.6e-23 110.5 61 73.8
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.6e-23 110.5 61 73.8
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 4.6e-23 110.5 59 76.3
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 6.0e-23 110.2 62 72.6
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 6.0e-23 110.2 61 75.4
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 7.9e-23 109.8 61 73.8
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-22 109.4 61 75.4
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.0e-22 109.4 59 72.9
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.8e-22 108.6 59 74.6
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-22 108.6 61 72.1
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.8e-22 108.6 61 72.1
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.8e-22 108.6 61 72.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.3e-22 108.2 59 74.6
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.3e-22 108.2 61 67.2
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 3.0e-22 107.8 61 70.5
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 3.0e-22 107.8 61 70.5
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 5.1e-22 107.1 61 75.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 5.1e-22 107.1 59 71.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-21 105.5 61 67.2
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.5e-21 105.5 59 76.3
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.9e-21 105.1 59 72.9
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.9e-21 105.1 57 68.4
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.5e-21 104.8 61 68.9
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 4.3e-21 104.0 59 69.5
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.3e-21 104.0 61 73.8
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 7.4e-21 103.2 59 71.2
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 9.6e-21 102.8 61 67.2
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 9.6e-21 102.8 52 75.0
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.3e-20 102.4 55 72.7
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.3e-20 102.4 59 69.5
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.3e-20 102.4 61 68.9
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.6e-20 102.1 59 69.5
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.6e-20 102.1 59 67.8
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.8e-20 101.3 58 69.0
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.8e-20 101.3 61 67.2
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 8.2e-20 99.8 61 67.2
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.4e-19 99.0 59 67.8
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 3.1e-19 97.8 59 66.1
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 3.1e-19 97.8 58 67.2
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 4.1e-19 97.4 62 66.1
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 5.3e-19 97.1 58 69.0
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 6.9e-19 96.7 61 62.3
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 6.9e-19 96.7 61 67.2
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 6.9e-19 96.7 61 67.2
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.2e-18 95.9 56 69.6
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.2e-18 95.9 56 69.6
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 1.5e-18 95.5 58 63.8
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 2.0e-18 95.1 91 49.5
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.0e-18 95.1 61 60.7
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.6e-18 94.7 48 75.0
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 2.6e-18 94.7 58 65.5
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.1e-16 89.4 58 60.3
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 2.5e-16 88.2 61 59.0
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 7.2e-16 86.7 59 59.3
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 9.3e-16 86.3 59 59.3
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.1e-15 85.1 46 80.4
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.1e-15 85.1 46 80.4
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.0e-14 81.3 61 55.7
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.0e-14 81.3 61 55.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.9e-14 80.9 61 54.1
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.9e-14 80.9 52 63.5
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 1.1e-13 79.3 59 55.9
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.6e-12 75.5 33 87.9
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.4e-11 72.4 32 84.4
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 1.4e-11 72.4 32 84.4
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.3e-11 70.5 43 67.4
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 2.6e-10 68.2 34 73.5
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 9.4e-08 59.7 61 45.9
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 1.2e-07 59.3 50 54.0
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.6e-07 57.8 61 44.3
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.8e-06 55.5 34 64.7
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 3.9e-06 54.3 61 44.3


User provided reference genes

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