Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 8.7e-106 387.1 215 100.0
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 4.2e-100 368.2 215 96.3
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 3.0e-90 335.5 218 89.0
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 1.4e-82 310.1 218 81.7
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 2.9e-77 292.4 215 79.5
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 4.2e-76 288.5 211 77.7
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 9.4e-76 287.3 211 78.2
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 2.1e-75 286.2 208 78.4
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 3.6e-75 285.4 214 77.6
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 1.8e-74 283.1 216 75.0
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 1.2e-73 280.4 213 77.0
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 2.0e-73 279.6 213 77.0
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 7.5e-73 277.7 212 77.4
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 7.5e-73 277.7 212 77.8
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 1.6e-70 270.0 214 73.8
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 5.5e-68 261.5 214 74.8
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 9.2e-63 244.2 202 74.8
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 9.5e-52 207.6 231 58.4
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 4.0e-42 175.6 214 55.6
AL5G28080 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 2.5e-36 156.4 106 90.6
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 3.3e-36 156.0 112 75.0
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 8.1e-35 151.4 197 48.7
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 6.8e-34 148.3 221 45.7
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 6.8e-34 148.3 185 49.2
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 8.9e-34 147.9 197 45.7
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 2.9e-32 142.9 167 49.1
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 1.9e-31 140.2 186 49.5
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 4.1e-31 139.0 190 48.9
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 1.2e-30 137.5 190 48.4
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 2.1e-30 136.7 206 46.1
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 6.0e-30 135.2 215 44.2
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 6.0e-30 135.2 193 47.7
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.7e-29 133.7 209 45.0
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 2.3e-29 133.3 189 46.6
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 8.6e-29 131.3 203 42.9
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.9e-28 130.2 199 44.2
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.6e-27 127.1 197 44.2
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 2.8e-27 126.3 160 45.6
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 4.7e-27 125.6 201 48.3
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 4.7e-27 125.6 177 47.5
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 4.7e-27 125.6 200 45.0
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 4.7e-27 125.6 218 42.7
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.1e-26 124.4 201 47.8
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 1.1e-26 124.4 178 44.4
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.8e-26 123.6 201 45.3
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 1.8e-26 123.6 191 43.5
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 2.4e-26 123.2 209 43.1
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 2.4e-26 123.2 211 40.8
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 6.9e-26 121.7 201 44.8
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 6.9e-26 121.7 160 46.2
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 2.0e-25 120.2 199 44.7
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 3.4e-25 119.4 212 38.7
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 3.4e-25 119.4 124 53.2
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 4.4e-25 119.0 193 45.6
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 7.6e-25 118.2 113 64.6
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 7.6e-25 118.2 222 36.9
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 9.9e-25 117.9 181 47.0
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 1.3e-24 117.5 167 46.1
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 1.3e-24 117.5 206 43.2
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.7e-24 117.1 216 44.0
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 1.7e-24 117.1 169 47.9
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 2.9e-24 116.3 202 42.1
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 3.8e-24 115.9 204 40.2
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 4.9e-24 115.5 213 37.6
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 8.4e-24 114.8 218 37.2
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 1.1e-23 114.4 219 39.7
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 1.4e-23 114.0 181 40.3
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 1.9e-23 113.6 200 41.5
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 4.2e-23 112.5 185 43.8
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 4.2e-23 112.5 173 40.5
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 4.2e-23 112.5 228 40.4
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 5.4e-23 112.1 195 39.5
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 9.3e-23 111.3 126 57.1
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 9.3e-23 111.3 201 42.3
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 1.2e-22 110.9 221 40.7
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 1.2e-22 110.9 220 36.8
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 4.6e-22 109.0 204 41.7
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 4.6e-22 109.0 158 43.7
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 7.8e-22 108.2 164 47.6
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.3e-21 107.5 182 44.5
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 2.3e-21 106.7 180 44.4
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 3.0e-21 106.3 217 37.8
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.1e-20 104.4 190 37.9
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 1.9e-20 103.6 165 46.1
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 2.5e-20 103.2 133 46.6
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 3.3e-20 102.8 186 39.8
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 4.3e-20 102.4 125 48.8
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 5.6e-20 102.1 165 45.5
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 9.6e-20 101.3 87 58.6
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.3e-19 100.9 67 82.1
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 4.8e-19 99.0 198 36.4
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 5.3e-18 95.5 123 52.0
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 1.2e-17 94.4 231 37.2
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 2.0e-17 93.6 248 32.7
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 7.6e-17 91.7 200 39.5
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 1.3e-16 90.9 184 41.8
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 1.3e-16 90.9 151 44.4
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 1.7e-16 90.5 134 42.5
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 2.9e-16 89.7 254 29.9
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.1e-15 87.8 115 50.4
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 3.2e-15 86.3 151 36.4
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 4.2e-15 85.9 204 37.3
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.7e-14 83.2 164 45.1
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 4.6e-14 82.4 140 43.6
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.1e-12 77.8 113 45.1
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.5e-12 76.6 214 35.0
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 5.6e-12 75.5 99 53.5
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 9.6e-12 74.7 220 34.5
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 6.2e-11 72.0 152 34.9
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 8.1e-11 71.6 187 35.3
ClCG00G004860 Citrullus lanatus HOM05D005915 ORTHO05D007239 1.1e-10 71.2 80 46.2
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 1.8e-10 70.5 99 41.4
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 4.5e-09 65.9 175 32.0
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 5.8e-09 65.5 219 29.2
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 7.6e-09 65.1 118 41.5
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 1.3e-08 64.3 51 60.8
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 1.7e-08 63.9 127 40.9
GSVIVG01017558001 Vitis vinifera HOM05D005915 ORTHO05D007239 1.4e-07 60.8 81 46.9
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 2.4e-07 60.1 122 43.4
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 7.1e-07 58.5 31 80.6


User provided reference genes

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