Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 8.4e-64 246.9 128 100.0
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.0e-56 223.4 125 90.4
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 9.0e-50 200.3 128 81.2
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 3.8e-48 194.9 127 78.7
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 6.5e-48 194.1 126 77.8
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.6e-46 189.5 129 78.3
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.0e-45 186.8 131 76.3
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 8.2e-43 177.2 136 68.4
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 7.7e-41 170.6 107 79.4
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 2.2e-40 169.1 125 72.0
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 3.8e-40 168.3 125 68.0
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 3.2e-39 165.2 125 70.4
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 1.0e-37 160.2 138 65.2
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 3.0e-37 158.7 122 67.2
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 8.8e-37 157.1 118 70.3
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 2.0e-33 146.0 148 57.4
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 2.6e-33 145.6 128 60.2
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 3.7e-27 125.2 119 53.8
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 4.8e-27 124.8 127 49.6
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.4e-26 123.2 126 50.8
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 5.3e-26 121.3 126 50.8
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.2e-25 120.2 126 48.4
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 2.0e-25 119.4 125 48.8
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 2.6e-25 119.0 128 47.7
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.3e-24 116.7 111 50.5
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 2.2e-24 115.9 126 46.0
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 2.9e-24 115.5 126 47.6
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 3.8e-24 115.2 124 51.6
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 5.0e-24 114.8 126 46.8
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 6.5e-24 114.4 122 45.1
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.5e-23 113.2 126 46.8
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 3.2e-23 112.1 124 48.4
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 3.2e-23 112.1 126 47.6
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 4.2e-23 111.7 126 47.6
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 9.4e-23 110.5 126 50.0
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.2e-22 110.2 126 50.0
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 1.6e-22 109.8 127 45.7
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.6e-22 109.8 126 50.0
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 4.7e-22 108.2 119 49.6
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.4e-21 106.7 126 45.2
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 3.0e-21 105.5 117 48.7
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 4.0e-21 105.1 119 47.9
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 4.0e-21 105.1 113 50.4
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.0e-21 105.1 119 44.5
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 6.7e-21 104.4 119 44.5
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 1.5e-20 103.2 123 47.2
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 2.0e-20 102.8 102 52.9
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 3.3e-20 102.1 123 47.2
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 4.4e-20 101.7 99 53.5
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 4.4e-20 101.7 102 50.0
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 5.7e-20 101.3 123 45.5
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.3e-19 100.1 108 50.9
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 1.3e-19 100.1 123 47.2
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.7e-19 99.8 120 45.8
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 3.7e-19 98.6 126 43.7
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 4.8e-19 98.2 91 53.8
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 6.3e-19 97.8 98 52.0
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 8.2e-19 97.4 98 50.0
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 8.2e-19 97.4 119 45.4
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 8.2e-19 97.4 106 48.1
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 1.8e-18 96.3 110 44.5
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 1.8e-18 96.3 115 43.5
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 5.3e-18 94.7 107 44.9
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 2.0e-17 92.8 95 51.6
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.0e-17 92.8 116 42.2
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 2.6e-17 92.4 76 61.8
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 2.6e-17 92.4 76 61.8
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 3.5e-17 92.0 119 46.2
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 4.5e-17 91.7 114 43.0
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 5.9e-17 91.3 119 44.5
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 5.9e-17 91.3 150 36.7
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 7.7e-17 90.9 88 52.3
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.0e-16 90.5 95 50.5
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.0e-16 90.5 120 43.3
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.0e-16 90.5 125 42.4
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.3e-16 90.1 119 43.7
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 1.3e-16 90.1 107 45.8
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.7e-16 89.7 86 53.5
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 2.2e-16 89.4 91 49.5
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 6.5e-16 87.8 125 39.2
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 1.1e-15 87.0 100 45.0
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 1.9e-15 86.3 119 39.5
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 2.5e-15 85.9 98 45.9
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 4.2e-15 85.1 98 45.9
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.2e-14 83.6 143 37.8
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 8.0e-14 80.9 119 38.7
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 1.4e-13 80.1 118 38.1
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.8e-13 79.7 124 36.3
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 3.0e-13 79.0 118 38.1
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 4.0e-13 78.6 53 67.9
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 8.8e-13 77.4 122 39.3
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 3.4e-12 75.5 117 35.9
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 9.8e-12 73.9 132 37.1
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 9.8e-12 73.9 98 41.8
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 1.3e-11 73.6 129 36.4
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 1.7e-11 73.2 117 35.0
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 6.3e-11 71.2 73 45.2
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 6.3e-11 71.2 71 46.5
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 6.3e-11 71.2 71 46.5
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 9.1e-10 67.4 118 31.4
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 1.2e-09 67.0 51 56.9
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 4.5e-09 65.1 117 35.9
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 5.9e-09 64.7 131 35.1
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.0e-08 63.9 94 40.4
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.3e-08 63.5 79 43.0
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 2.9e-08 62.4 79 43.0
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 6.5e-08 61.2 86 40.7
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 1.5e-07 60.1 95 38.9


User provided reference genes

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