Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G80133 Arabidopsis thaliana HOM05D004379 ORTHO05D005186 4.6e-57 224.2 100 100.0
AL2G41390 Arabidopsis lyrata HOM05D004379 ORTHO05D005186 1.1e-50 203.0 101 91.1
CARHR074360 Cardamine hirsuta HOM05D004379 ORTHO05D005186 1.3e-43 179.5 103 77.7
Carub.0002s2738 Capsella rubella HOM05D004379 ORTHO05D005186 6.2e-38 160.6 101 70.3
A02p23810 Brassica napus HOM05D004379 ORTHO05D005186 8.1e-38 160.2 100 70.0
BraA02t07372Z Brassica rapa HOM05D004379 ORTHO05D005186 8.1e-38 160.2 100 70.0
Thhalv10019808m.g Eutrema salsugineum HOM05D004379 ORTHO05D005186 1.1e-37 159.8 103 75.7
BolC2t09767H Brassica oleracea HOM05D004379 ORTHO05D005186 3.4e-36 154.8 100 69.0
C02p37550 Brassica napus HOM05D004379 ORTHO05D005186 2.4e-34 148.7 100 67.0
BcaB05g25296 Brassica carinata HOM05D004379 ORTHO05D005186 4.9e-27 124.4 68 69.1
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 3.2e-10 68.6 83 38.6
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 9.3e-10 67.0 97 35.1
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 1.2e-09 66.6 116 32.8
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.1e-09 65.9 96 35.4
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 2.1e-09 65.9 117 35.0
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 2.1e-09 65.9 100 34.0
Glyma.01G242700 Glycine max HOM05D002122 ORTHO05D002205 6.0e-09 64.3 64 37.5
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 6.0e-09 64.3 78 35.9
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 6.0e-09 64.3 86 38.4
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 7.9e-09 63.9 109 36.7
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 7.9e-09 63.9 97 34.0
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.0e-08 63.5 71 38.0
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 1.0e-08 63.5 75 40.0
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 1.0e-08 63.5 117 30.8
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.3e-08 63.2 95 32.6
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 1.3e-08 63.2 95 33.7
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.3e-08 63.2 119 33.6
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 1.3e-08 63.2 81 33.3
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 1.8e-08 62.8 98 34.7
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.8e-08 62.8 120 35.8
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.8e-08 62.8 120 35.8
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 1.8e-08 62.8 117 33.3
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 2.3e-08 62.4 93 36.6
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 2.3e-08 62.4 66 37.9
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 2.3e-08 62.4 114 35.1
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 2.3e-08 62.4 79 35.4
Glyma.02G235000 Glycine max HOM05D002122 ORTHO05D002205 3.0e-08 62.0 55 41.8
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 3.9e-08 61.6 112 33.9
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 3.9e-08 61.6 117 31.6
Phvul.002G051900 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 3.9e-08 61.6 64 37.5
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 3.9e-08 61.6 97 33.0
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 3.9e-08 61.6 97 29.9
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 5.1e-08 61.2 104 37.5
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 5.1e-08 61.2 104 37.5
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 5.1e-08 61.2 112 33.9
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.1e-08 61.2 118 30.5
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 5.1e-08 61.2 115 33.0
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 5.1e-08 61.2 103 34.0
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 5.1e-08 61.2 74 39.2
VMungo1215G2893 Vigna mungo HOM05D002122 ORTHO05D002205 5.1e-08 61.2 64 37.5
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 6.7e-08 60.8 65 36.9
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 6.7e-08 60.8 64 40.6
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 6.7e-08 60.8 77 35.1
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 8.7e-08 60.5 110 30.9
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 8.7e-08 60.5 68 38.2
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.1e-07 60.1 73 32.9
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 1.1e-07 60.1 99 33.3
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 99 33.3
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 99 33.3
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 99 33.3
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 99 33.3
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 1.1e-07 60.1 105 34.3
Cfa020793 Carpinus fangiana HOM05D002122 ORTHO05D002205 1.5e-07 59.7 56 41.1
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 1.5e-07 59.7 72 36.1
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 1.5e-07 59.7 88 34.1
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 1.5e-07 59.7 89 33.7
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 1.5e-07 59.7 107 28.0
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 1.9e-07 59.3 74 35.1
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.9e-07 59.3 91 34.1
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 1.9e-07 59.3 81 37.0
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 1.9e-07 59.3 101 38.6
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 1.9e-07 59.3 95 28.4
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 1.9e-07 59.3 93 29.0
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 2.5e-07 58.9 123 33.3
CiPaw.05G017400 Carya illinoinensis HOM05D002122 ORTHO05D002205 2.5e-07 58.9 70 40.0
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 2.5e-07 58.9 67 38.8
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 2.5e-07 58.9 85 31.8
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 3.3e-07 58.5 110 30.9
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 3.3e-07 58.5 77 35.1
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 3.3e-07 58.5 76 31.6
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 3.3e-07 58.5 114 32.5
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.3e-07 58.5 96 32.3
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 3.3e-07 58.5 96 32.3
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 3.3e-07 58.5 114 31.6
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 3.3e-07 58.5 91 33.0
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 3.3e-07 58.5 90 32.2
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 3.3e-07 58.5 74 33.8
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 4.3e-07 58.2 93 32.3
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 4.3e-07 58.2 77 36.4
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 4.3e-07 58.2 69 36.2
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 4.3e-07 58.2 96 28.1
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 5.7e-07 57.8 79 34.2
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 5.7e-07 57.8 91 36.3
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 5.7e-07 57.8 95 31.6
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 5.7e-07 57.8 94 33.0
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 5.7e-07 57.8 111 33.3
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 5.7e-07 57.8 68 38.2
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 5.7e-07 57.8 100 32.0
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 7.4e-07 57.4 78 32.1
RcHm_v2.0_Chr6g0253751 Rosa chinensis HOM05D002122 ORTHO05D002205 7.4e-07 57.4 59 37.3
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 7.4e-07 57.4 60 40.0
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 9.6e-07 57.0 70 37.1
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 9.6e-07 57.0 105 35.2
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 9.6e-07 57.0 82 31.7
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 9.6e-07 57.0 66 36.4
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 9.6e-07 57.0 71 33.8
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 9.6e-07 57.0 70 37.1
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 1.3e-06 56.6 98 29.6
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 1.3e-06 56.6 67 38.8
Lalb_Chr04g0263751 Lupinus albus HOM05D002122 ORTHO05D002205 1.3e-06 56.6 62 35.5
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 1.3e-06 56.6 67 37.3
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 1.6e-06 56.2 61 39.3
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 1.6e-06 56.2 65 38.5
FvH4_2g04310 Fragaria vesca HOM05D002122 ORTHO05D002205 1.6e-06 56.2 54 38.9
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 1.6e-06 56.2 73 37.0
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 1.6e-06 56.2 67 34.3
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 2.1e-06 55.8 89 31.5
Nitab4.5_0000321g0260 Nicotiana tabacum HOM05D002122 ORTHO05D002205 2.1e-06 55.8 63 38.1
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.8e-06 55.5 91 26.4
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 2.8e-06 55.5 91 26.4
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 2.8e-06 55.5 92 30.4
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 2.8e-06 55.5 83 32.5
COL.COLO4_32519 Corchorus olitorius HOM05D002122 ORTHO05D002205 3.7e-06 55.1 54 42.6
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 3.7e-06 55.1 87 29.9
Gohir.A03G182800 Gossypium hirsutum HOM05D002122 ORTHO05D002205 3.7e-06 55.1 54 37.0
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.7e-06 55.1 90 25.6
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 3.7e-06 55.1 73 37.0
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 3.7e-06 55.1 117 28.2
SEGI_35115 Sequoiadendron giganteum HOM05D001149 ORTHO05D000970 3.7e-06 55.1 64 37.5
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 4.8e-06 54.7 120 29.2
FAN24G2314 Fragaria x ananassa HOM05D002122 ORTHO05D002205 4.8e-06 54.7 53 37.7
Gohir.D02G204400 Gossypium hirsutum HOM05D002122 ORTHO05D002205 4.8e-06 54.7 54 37.0
Gorai.005G231700 Gossypium raimondii HOM05D002122 ORTHO05D002205 4.8e-06 54.7 54 37.0
Pp3c5_11260 Physcomitrium patens HOM05D002122 ORTHO05D002205 4.8e-06 54.7 56 42.9
Solyc06g053970.4 Solanum lycopersicum HOM05D002122 ORTHO05D002205 4.8e-06 54.7 95 30.5
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 4.8e-06 54.7 96 28.1
C01p28490 Brassica napus HOM05D002122 ORTHO05D002205 6.2e-06 54.3 70 38.6
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 6.2e-06 54.3 69 36.2
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 6.2e-06 54.3 74 31.1
PGR004G0428 Punica granatum HOM05D002122 ORTHO05D002205 6.2e-06 54.3 75 38.7
BcaC09g50145 Brassica carinata HOM05D002122 ORTHO05D002205 8.2e-06 53.9 70 38.6
A01p22940 Brassica napus HOM05D002122 ORTHO05D002205 8.2e-06 53.9 70 38.6
BolC1t02778H Brassica oleracea HOM05D002122 ORTHO05D002205 8.2e-06 53.9 70 38.6
BraA01t02208Z Brassica rapa HOM05D002122 ORTHO05D002205 8.2e-06 53.9 70 38.6
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 8.2e-06 53.9 65 33.8
Rhsim04G0197600 Rhododendron simsii HOM05D002122 ORTHO05D002205 8.2e-06 53.9 81 38.3
Thecc.02G116400 Theobroma cacao HOM05D002122 ORTHO05D002205 8.2e-06 53.9 54 40.7
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 8.2e-06 53.9 93 33.3


User provided reference genes

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