Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1548.5 773 100.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1496.5 773 96.0
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1449.5 773 93.1
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1448.7 775 92.4
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1442.6 775 92.3
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1433.3 777 91.2
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1430.6 777 91.0
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1428.3 773 91.3
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1427.9 775 90.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1423.7 777 90.3
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1421.4 777 90.5
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1418.3 775 90.1
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1397.1 775 89.2
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1359.4 775 87.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1351.7 785 86.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1335.9 773 85.0
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1334.3 776 85.6
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1316.2 781 84.8
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1313.1 783 84.0
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1307.4 786 84.1
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1201.8 782 77.1
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1190.6 771 74.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 763 75.8
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 763 75.5
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1183.3 771 74.3
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1182.9 763 75.5
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 771 73.8
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1174.8 773 73.5
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1174.5 773 73.9
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1167.5 772 73.4
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1167.1 771 74.2
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1162.9 808 70.8
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1158.3 771 72.5
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1157.9 812 70.6
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1156.4 774 72.1
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1156.0 771 72.5
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1154.4 769 73.2
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1153.3 811 69.5
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1152.1 774 73.4
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1149.0 778 73.0
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1147.9 773 72.4
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1144.4 779 72.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1140.2 771 71.7
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1139.8 769 72.2
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 770 71.9
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1137.5 771 72.0
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 772 71.4
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1136.7 769 72.2
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 773 71.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1134.8 773 71.2
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1134.8 770 71.8
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1134.0 771 71.7
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1132.5 769 71.9
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 769 71.7
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 774 70.9
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1129.8 757 72.8
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1128.6 769 70.9
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1128.2 771 71.7
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1127.5 769 71.5
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1122.5 773 70.2
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1122.1 770 70.8
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1120.5 772 70.6
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1116.7 770 70.4
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1115.9 772 70.3
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 770 71.4
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1114.8 769 71.4
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1111.3 754 71.8
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1109.7 751 71.0
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 757 71.6
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 757 71.3
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1101.7 771 69.6
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1099.3 771 69.0
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1097.4 770 69.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1096.6 770 69.2
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1092.4 769 70.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1090.9 884 63.2
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1088.2 774 68.6
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1087.4 770 68.4
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1080.9 768 68.6
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1079.7 771 68.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1075.1 768 68.0
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 1.1e-310 1069.7 761 68.5
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 1.3e-308 1062.8 770 67.9
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.1e-306 1055.4 781 66.8
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.0e-305 1053.1 748 68.4
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 4.0e-302 1041.2 773 66.0
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 1.8e-294 1015.8 676 72.9
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 5.2e-294 1014.2 778 65.2
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.7e-290 1001.9 698 70.3
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 1.7e-289 999.2 784 64.8
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 3.6e-287 991.5 757 65.3
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 1.3e-284 983.0 777 64.4
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 1.2e-282 976.5 769 64.1
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.0e-281 973.4 691 69.6
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.0e-281 971.8 663 71.0
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.1e-279 965.7 744 63.4
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 4.0e-278 961.4 732 65.8
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 5.8e-277 957.6 741 64.6
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 5.1e-273 944.5 764 64.1
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 6.7e-273 944.1 766 61.6
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.7e-271 938.3 761 62.0
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.0e-268 930.2 768 59.2
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 8.2e-263 910.6 746 63.7
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 4.8e-247 858.2 700 60.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.1e-246 855.5 631 67.5
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.5e-245 853.2 659 64.8
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 1.8e-233 813.1 644 62.7
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.3e-233 812.8 661 61.4
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 7.7e-229 797.7 555 70.1
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 2.1e-226 789.6 561 68.1
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 5.9e-213 745.0 766 52.7
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 1.3e-212 743.8 509 70.7
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 4.0e-185 652.5 441 71.9
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.4e-174 615.5 442 67.4
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.6e-146 524.2 350 70.9
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 4.2e-142 509.6 372 67.7
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.6e-131 473.8 608 45.9
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.5e-110 404.1 274 71.5
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.6e-109 400.2 346 57.5
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 6.6e-95 352.8 249 67.9
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 9.2e-89 332.4 250 62.4
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.7e-74 285.0 358 46.1
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 9.6e-70 269.2 183 68.3
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.1e-68 265.8 260 58.5
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 2.6e-67 261.2 266 51.9
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.9e-63 247.3 154 76.0
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 8.7e-63 246.1 225 55.6
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 2.1e-61 241.5 252 51.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 6.2e-61 240.0 211 61.6
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.4e-60 238.0 137 81.0
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.4e-58 229.9 137 78.1
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-46 192.6 210 48.6
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 8.1e-45 186.4 149 62.4
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.0e-43 181.8 105 81.0
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.7e-42 178.7 105 78.1
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.7e-42 178.7 105 80.0
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.9e-41 175.3 105 74.3
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 7.1e-41 173.3 149 60.4
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 3.5e-40 171.0 119 68.9
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.1e-37 161.8 118 65.3
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.3e-36 157.1 105 65.7
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.5e-35 155.6 87 81.6
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.0e-34 150.6 91 75.8
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.7e-32 144.8 93 76.3
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 2.5e-30 138.3 96 65.6
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.5e-30 138.3 85 71.8
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.2e-29 135.2 79 77.2
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.3e-28 130.6 89 69.7
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.3e-28 130.6 89 69.7
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-27 129.4 89 68.5
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-27 129.0 83 72.3
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 3.8e-26 124.4 95 64.2
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.0e-26 124.0 79 69.6
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.7e-22 110.5 214 35.0
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-21 109.4 124 48.4
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.1e-20 104.4 214 34.1
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 5.3e-20 104.0 163 39.3
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 6.9e-20 103.6 72 63.9
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.8e-18 97.8 80 63.8
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.7e-13 82.4 77 55.8
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-12 78.2 51 70.6
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 3.8e-10 71.2 59 62.7
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 6.5e-10 70.5 93 43.0
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.1e-09 69.7 45 68.9
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 1.6e-08 65.9 37 70.3
BraA06t24594Z Brassica rapa HOM05D004228 ORTHO05D005137 2.1e-08 65.5 41 80.5
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 3.3e-06 58.2 44 59.1
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 5.7e-06 57.4 50 60.0
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 7.5e-06 57.0 152 28.3


User provided reference genes

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