Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 2.3e-99 365.5 181 100.0
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 4.1e-80 301.6 159 92.5
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 5.3e-80 301.2 169 89.9
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.2e-79 300.1 158 91.8
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 6.1e-76 287.7 156 87.8
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 7.9e-76 287.3 156 88.5
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 7.9e-76 287.3 156 88.5
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.3e-75 285.8 156 87.8
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 6.7e-75 284.3 156 87.8
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 1.1e-74 283.5 156 87.2
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 3.3e-74 282.0 152 88.8
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 3.0e-67 258.8 156 77.6
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.1e-66 256.9 184 70.1
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 2.8e-65 252.3 154 77.3
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 3.1e-64 248.8 157 72.6
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 1.6e-63 246.5 160 73.1
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 3.5e-63 245.4 152 76.3
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 3.5e-63 245.4 155 74.8
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 4.5e-63 245.0 193 63.2
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 5.9e-63 244.6 158 73.4
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 2.9e-62 242.3 159 74.2
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 3.8e-62 241.9 155 73.5
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.8e-62 241.9 155 73.5
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 6.5e-62 241.1 158 73.4
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 8.5e-62 240.7 159 73.0
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 1.1e-61 240.4 161 73.3
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 1.5e-61 240.0 154 72.7
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 3.2e-61 238.8 159 74.2
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 4.2e-61 238.4 164 71.3
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 4.2e-61 238.4 157 70.7
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 7.2e-61 237.7 155 74.2
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.2e-60 236.9 156 73.1
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.1e-60 236.1 157 72.0
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 2.1e-60 236.1 161 68.9
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 2.7e-60 235.7 160 74.4
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 1.0e-59 233.8 161 70.2
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 3.0e-59 232.3 154 71.4
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 4.0e-59 231.9 156 71.2
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 4.0e-59 231.9 154 70.8
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 5.2e-59 231.5 153 71.2
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 6.7e-59 231.1 157 70.1
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 1.5e-58 229.9 160 72.5
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 2.0e-58 229.6 157 70.1
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 2.0e-58 229.6 157 69.4
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.6e-58 229.2 155 71.0
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 3.3e-58 228.8 153 71.2
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 3.3e-58 228.8 156 71.2
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 3.3e-58 228.8 153 73.2
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 3.3e-58 228.8 192 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 4.4e-58 228.4 156 69.2
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 4.4e-58 228.4 157 69.4
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 4.4e-58 228.4 160 73.1
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 5.7e-58 228.0 162 68.5
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 1.3e-57 226.9 153 71.2
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 1.3e-57 226.9 161 70.2
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 2.2e-57 226.1 153 71.2
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 2.2e-57 226.1 153 71.2
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 2.2e-57 226.1 160 71.9
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 4.8e-57 224.9 164 64.6
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 4.8e-57 224.9 159 65.4
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 6.3e-57 224.6 157 72.0
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 6.3e-57 224.6 157 72.0
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 1.1e-56 223.8 157 68.8
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 1.1e-56 223.8 162 67.9
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 5.3e-56 221.5 162 67.3
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.2e-55 220.3 162 67.3
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 2.0e-55 219.5 153 69.9
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 3.5e-55 218.8 159 66.0
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 7.7e-55 217.6 171 63.7
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 7.7e-55 217.6 171 63.7
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 1.0e-54 217.2 153 69.3
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 2.2e-54 216.1 155 66.5
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.9e-54 215.7 153 68.6
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 6.5e-54 214.5 153 68.6
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.1e-53 213.8 162 64.8
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 1.9e-53 213.0 193 58.5
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 3.2e-53 212.2 156 65.4
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 4.2e-53 211.8 153 67.3
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 4.2e-53 211.8 151 67.5
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 5.5e-53 211.5 159 66.0
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 9.4e-53 210.7 152 69.1
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 4.7e-52 208.4 159 63.5
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 4.7e-52 208.4 150 65.3
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 2.3e-51 206.1 157 65.0
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 5.7e-50 201.4 222 50.9
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 7.0e-48 194.5 169 60.9
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 1.6e-47 193.4 133 70.7
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 2.7e-47 192.6 150 62.7
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 5.5e-45 184.9 118 70.3
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 1.4e-43 180.3 114 75.4
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 2.3e-43 179.5 119 73.1
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 2.3e-43 179.5 122 71.3
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 3.0e-43 179.1 123 71.5
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 4.4e-42 175.3 161 57.1
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.0e-38 164.1 157 56.1
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 5.6e-37 158.3 110 70.9
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.8e-36 156.0 108 70.4
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 1.5e-34 150.2 89 78.7
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 4.9e-33 145.2 90 74.4
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 2.4e-32 142.9 160 48.1
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 9.2e-24 114.4 75 72.0
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 1.4e-19 100.5 95 56.8
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 6.2e-12 75.1 81 55.6
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 6.2e-12 75.1 67 55.2
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 2.0e-10 70.1 64 57.8
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 2.9e-09 66.2 40 67.5


User provided reference genes

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