Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 5.3e-262 907.1 454 100.0
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.6e-248 861.7 456 95.2
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.7e-242 841.6 454 93.2
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.5e-237 824.7 454 90.5
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.7e-231 804.7 456 89.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.1e-222 775.0 457 85.1
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 5.4e-222 774.2 457 85.1
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.7e-221 771.9 457 84.9
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 4.5e-221 771.2 448 86.6
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-220 768.1 458 84.9
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.8e-220 768.1 453 85.2
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.5e-219 766.1 452 86.1
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.5e-219 766.1 452 86.1
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 9.5e-219 763.5 452 85.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.4e-217 759.6 450 85.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 8.9e-217 756.9 454 85.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 4.4e-216 754.6 452 85.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 9.8e-216 753.4 448 85.9
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 9.8e-216 753.4 452 85.4
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 6.4e-215 750.7 449 85.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.6e-213 746.1 454 85.9
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 6.4e-207 724.2 457 79.9
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.0e-192 676.0 446 77.6
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 9.9e-192 673.7 447 78.1
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.3e-188 662.5 458 73.1
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 8.7e-188 660.6 449 76.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 8.7e-188 660.6 457 74.0
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.2e-186 656.8 447 75.6
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 4.4e-184 648.3 464 70.3
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.9e-183 645.6 457 71.8
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.9e-183 645.6 457 71.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 4.9e-183 644.8 459 70.8
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 8.4e-183 644.0 451 72.3
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.2e-182 642.1 457 71.1
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.2e-182 641.7 457 70.9
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 5.4e-182 641.3 457 70.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 9.3e-182 640.6 466 71.5
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.2e-181 640.2 449 74.2
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.7e-180 636.3 460 70.4
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.5e-179 633.3 448 74.8
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 6.2e-178 627.9 457 70.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.2e-178 627.9 455 71.2
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.2e-176 623.6 459 68.8
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.7e-175 619.8 458 70.1
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 2.9e-175 619.0 452 69.2
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.1e-174 617.1 451 70.5
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.4e-174 616.7 452 69.5
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.2e-174 615.5 461 68.8
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.4e-174 614.8 439 72.0
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.1e-173 612.8 451 70.1
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.5e-173 612.1 461 68.5
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 4.6e-173 611.7 461 68.8
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 6.0e-173 611.3 470 67.4
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 6.0e-173 611.3 448 71.0
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.0e-173 611.3 461 68.5
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.3e-172 610.1 458 68.1
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.1e-172 608.2 461 68.5
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 6.7e-172 607.8 449 70.4
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.5e-171 605.9 453 69.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 3.3e-171 605.5 467 66.8
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 3.3e-171 605.5 457 67.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 4.3e-171 605.1 463 67.0
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 5.6e-171 604.7 452 69.9
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.1e-170 602.8 457 67.8
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.8e-170 601.7 451 69.4
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 4.0e-169 598.6 455 69.0
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.5e-168 596.7 484 64.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.0e-168 596.3 486 65.0
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 3.4e-168 595.5 454 66.3
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.5e-168 595.1 451 68.5
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 9.9e-168 594.0 449 69.3
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.3e-167 593.6 452 67.7
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 3.8e-167 592.0 451 68.1
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.9e-167 591.7 458 66.8
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.4e-166 590.1 454 68.9
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 3.2e-166 589.0 455 66.6
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 4.2e-166 588.6 480 65.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 5.5e-166 588.2 450 67.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.1e-165 586.3 445 68.1
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.7e-165 585.9 447 68.7
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 6.0e-165 584.7 429 70.4
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 6.0e-165 584.7 445 68.1
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 6.0e-165 584.7 472 65.9
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 3.0e-164 582.4 528 59.7
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.1e-163 580.5 451 66.3
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.9e-163 579.7 447 66.9
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.3e-163 578.9 474 64.8
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.6e-162 576.6 458 66.4
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.6e-162 576.6 437 68.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.8e-162 575.9 448 67.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 8.2e-162 574.3 453 67.1
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.1e-161 573.9 448 67.2
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.1e-161 572.4 430 69.3
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 4.0e-161 572.0 340 84.4
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.0e-161 572.0 451 65.6
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 5.3e-161 571.6 450 66.2
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.9e-161 571.2 454 65.6
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 9.0e-161 570.9 456 66.7
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.5e-160 570.1 451 65.4
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.4e-160 568.9 451 65.6
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 8.4e-159 564.3 485 63.3
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.1e-158 563.9 448 66.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-158 563.9 450 65.1
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.2e-158 562.4 455 65.1
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 5.1e-156 555.1 453 64.2
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 7.4e-155 551.2 449 63.5
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 2.8e-154 549.3 462 65.4
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 2.8e-154 549.3 444 64.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.7e-154 548.9 451 64.3
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 6.3e-154 548.1 444 64.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.3e-153 545.0 450 63.8
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.6e-152 542.7 412 67.2
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 2.9e-151 539.3 454 65.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.4e-150 537.0 438 63.7
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.9e-150 536.6 454 64.3
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 3.2e-150 535.8 421 67.9
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-147 526.9 525 54.7
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 7.4e-147 524.6 438 64.8
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.7e-146 523.5 465 60.2
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 4.8e-146 521.9 416 65.9
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.9e-143 512.7 444 60.1
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.3e-139 499.2 448 61.2
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.1e-137 492.3 453 58.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.1e-137 491.1 436 61.9
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 9.1e-137 491.1 418 62.9
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.3e-135 487.3 429 59.4
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 3.3e-131 472.6 457 58.0
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.8e-130 469.5 415 62.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 7.7e-120 434.9 289 76.1
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 7.7e-120 434.9 516 51.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.9e-119 433.0 432 54.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.8e-116 421.8 377 59.9
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 4.7e-109 399.1 460 50.2
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.0e-108 397.9 324 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 6.8e-108 395.2 446 49.8
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 6.8e-108 395.2 450 50.7
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 7.8e-104 381.7 457 47.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.0e-100 369.8 250 73.6
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.6e-93 346.3 193 90.7
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-91 340.1 320 60.6
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.9e-87 326.2 309 59.2
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 3.1e-84 316.6 193 80.8
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 9.9e-83 311.6 452 43.4
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.4e-73 279.3 282 55.7
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 7.1e-73 278.9 216 63.9
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.3e-71 274.6 330 47.0
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.0e-67 260.8 193 67.4
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.6e-67 260.4 528 36.7
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 6.6e-63 245.7 186 67.7
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 4.3e-62 243.0 153 79.1
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 8.1e-61 238.8 205 60.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.5e-59 234.6 237 58.2
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 2.9e-58 230.3 263 51.0
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 6.0e-56 222.6 120 90.8
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.0e-51 207.6 220 51.8
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.6e-48 198.0 286 43.4
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.5e-46 190.7 130 75.4
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.8e-45 186.4 172 54.7
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.0e-44 183.3 527 30.7
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.2e-43 181.8 136 68.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.1e-41 175.3 483 31.3
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 6.5e-34 149.4 295 34.6
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.1e-32 144.4 156 53.8
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.6e-32 143.7 165 44.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.6e-27 127.5 85 71.8
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.2e-25 120.6 79 79.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 7.2e-25 119.4 79 70.9
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.6e-24 118.2 73 83.6
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.0e-22 111.3 114 58.8
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-18 99.0 156 44.9
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.9e-18 97.4 116 54.3
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.2e-15 86.7 54 77.8
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 8.8e-15 85.9 138 42.8
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 3.7e-13 80.5 52 78.8
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.0e-10 72.4 53 71.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.7e-10 71.6 51 68.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-08 65.1 61 54.1
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.1e-08 64.7 43 72.1
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.1e-08 64.7 75 52.0
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.6e-06 57.8 54 55.6
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 4.4e-06 57.0 36 66.7


User provided reference genes

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