Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.9e-84 315.8 165 100.0
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.1e-83 312.4 165 98.2
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 7.0e-79 297.4 165 93.3
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 9.1e-79 297.0 166 95.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.6e-78 296.2 165 93.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.7e-77 292.7 165 92.1
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 8.5e-77 290.4 165 91.5
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.6e-75 286.2 165 87.9
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.4e-74 283.1 165 90.9
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 8.8e-74 280.4 166 89.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 8.8e-74 280.4 166 89.8
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 8.8e-74 280.4 166 89.2
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.5e-73 279.6 166 89.2
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.0e-73 279.3 166 89.8
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.5e-68 262.3 163 82.8
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.6e-67 259.6 163 85.3
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.6e-65 252.3 157 85.4
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 4.9e-64 248.1 159 80.5
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 6.4e-64 247.7 157 84.7
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.8e-63 246.1 160 83.8
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.8e-63 246.1 160 83.8
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.4e-63 245.7 157 84.7
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 7.0e-63 244.2 154 85.7
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 7.0e-63 244.2 160 83.1
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 4.7e-59 231.5 160 73.8
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.4e-58 229.9 160 75.0
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.3e-58 229.2 161 75.2
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.1e-58 228.8 158 74.7
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.0e-58 228.4 161 75.2
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 5.2e-58 228.0 145 80.7
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 5.2e-58 228.0 145 80.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 6.8e-58 227.6 160 73.8
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.5e-57 226.5 165 73.9
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.6e-57 225.7 155 76.1
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 4.4e-57 224.9 165 72.1
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.2e-56 222.6 152 75.7
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 2.9e-56 222.2 143 79.0
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 6.4e-56 221.1 145 77.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 6.4e-56 221.1 165 72.7
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 6.4e-56 221.1 166 71.1
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 8.3e-56 220.7 144 77.8
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 3.2e-55 218.8 144 75.7
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 3.2e-55 218.8 145 76.6
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 4.1e-55 218.4 153 75.2
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 9.2e-55 217.2 166 69.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 9.2e-55 217.2 166 69.9
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.2e-54 216.9 158 73.4
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.6e-54 216.5 152 73.0
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.6e-54 216.5 145 77.2
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 2.0e-54 216.1 161 69.6
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 2.0e-54 216.1 158 70.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.0e-54 216.1 166 70.5
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.7e-54 215.7 155 74.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 3.5e-54 215.3 145 73.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 3.5e-54 215.3 161 68.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 6.0e-54 214.5 164 67.7
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 7.8e-54 214.2 160 70.6
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 7.8e-54 214.2 136 79.4
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 7.8e-54 214.2 151 72.8
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.0e-53 213.8 161 68.3
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.3e-53 213.4 144 76.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.3e-53 212.6 154 71.4
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.0e-53 212.2 143 74.1
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.6e-53 211.1 130 88.5
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.9e-52 209.5 142 76.1
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.5e-52 209.1 130 87.7
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.3e-52 208.4 141 75.2
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 7.3e-52 207.6 145 73.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.2e-51 206.8 157 70.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 4.7e-51 204.9 139 76.3
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 8.1e-51 204.1 143 73.4
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 8.1e-51 204.1 142 73.2
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 8.1e-51 204.1 145 71.7
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.3e-50 202.6 145 71.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 3.1e-50 202.2 156 69.9
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.0e-50 201.8 195 60.0
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 6.8e-50 201.1 139 72.7
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.8e-50 201.1 154 65.6
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.2e-49 200.3 146 69.9
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.2e-49 200.3 137 75.2
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.0e-49 199.5 141 73.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-49 199.5 138 71.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.0e-49 199.5 149 69.8
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 2.0e-49 199.5 165 62.4
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 7.5e-49 197.6 144 70.1
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 7.5e-49 197.6 192 58.9
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 7.5e-49 197.6 141 73.0
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 9.8e-49 197.2 141 72.3
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.3e-48 196.8 145 69.0
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.7e-48 196.4 141 72.3
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.7e-48 196.4 154 63.6
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.2e-48 196.1 155 65.8
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 3.7e-48 195.3 144 69.4
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 4.9e-48 194.9 149 71.1
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 6.4e-48 194.5 125 79.2
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-47 193.7 140 73.6
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 3.2e-47 192.2 143 67.8
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.2e-47 192.2 138 69.6
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.1e-46 189.5 145 68.3
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.1e-46 189.5 136 70.6
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 4.6e-46 188.3 124 77.4
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 7.8e-46 187.6 138 69.6
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.3e-44 181.8 134 70.1
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.6e-44 181.4 103 93.2
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 6.2e-43 177.9 172 57.0
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 8.1e-43 177.6 129 70.5
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 5.8e-41 171.4 138 64.5
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.4e-39 164.9 109 78.0
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 5.4e-39 164.9 124 70.2
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.2e-38 163.7 136 62.5
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.0e-37 160.6 99 83.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 2.3e-37 159.5 101 79.2
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 5.1e-37 158.3 103 76.7
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 1.9e-36 156.4 104 79.8
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 7.3e-36 154.5 104 78.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.1e-34 150.6 104 73.1
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.6e-33 146.0 117 61.5
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.4e-31 139.4 118 61.0
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.1e-30 136.3 128 52.3
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 7.8e-30 134.4 138 52.9
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 2.5e-28 129.4 79 81.0
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.5e-28 129.4 94 70.2
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-27 127.1 84 76.2
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 2.1e-27 126.3 93 67.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 4.0e-26 122.1 113 61.9
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.9e-24 115.2 74 78.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 9.6e-20 100.9 127 52.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.6e-17 92.8 121 43.0
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 8.4e-16 87.8 55 78.2
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 3.2e-15 85.9 121 43.0
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 2.7e-14 82.8 66 63.6
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 7.9e-14 81.3 132 39.4
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.7e-11 72.4 54 64.8
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 6.2e-11 71.6 52 75.0
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 6.2e-11 71.6 52 75.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.5e-09 65.5 52 63.5
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.5e-07 59.7 42 69.0
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 7.1e-07 58.2 39 82.1
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 7.1e-07 58.2 36 83.3


User provided reference genes

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