Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.9e-270 935.3 482 100.0
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.7e-234 815.8 482 89.8
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 9.1e-220 766.9 487 80.5
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 3.4e-198 695.3 475 75.4
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 7.5e-198 694.1 480 73.3
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 2.0e-195 686.0 482 74.5
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.1e-169 600.5 479 64.1
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.4e-164 583.6 480 65.0
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 7.8e-163 577.8 481 66.3
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.7e-162 576.6 480 64.4
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 2.3e-162 576.2 481 65.9
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 7.6e-158 561.2 483 62.5
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.9e-137 493.4 480 58.3
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 7.0e-79 298.9 322 54.7
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.8e-66 257.7 511 36.2
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 3.4e-65 253.4 508 32.3
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 2.3e-61 240.7 520 32.1
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.2e-56 224.2 602 32.2
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.4e-49 200.3 560 30.5
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.3e-48 198.4 590 31.9
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 3.8e-48 196.8 567 30.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 3.2e-47 193.7 580 29.7
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 7.8e-46 189.1 503 29.8
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.3e-45 188.3 552 32.2
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.0e-45 187.2 403 34.0
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 3.9e-45 186.8 375 34.4
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 5.1e-45 186.4 440 35.5
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 3.3e-44 183.7 540 29.3
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 5.6e-44 183.0 545 31.4
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 5.6e-44 183.0 402 35.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 7.3e-44 182.6 584 28.8
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 8.1e-43 179.1 416 33.9
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.8e-42 177.9 552 31.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.2e-41 175.3 468 29.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.0e-41 174.5 570 27.7
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 8.4e-40 169.1 591 30.5
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.1e-39 168.7 551 29.8
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.4e-39 168.3 423 33.1
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.7e-38 164.1 607 28.8
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 8.7e-37 159.1 367 34.1
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.9e-36 157.9 267 39.0
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.3e-36 157.1 349 35.2
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 9.6e-36 155.6 630 27.5
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 4.8e-35 153.3 281 33.8
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 2.4e-34 151.0 362 39.2
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 6.9e-34 149.4 275 39.6
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 6.9e-34 149.4 258 37.6
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.5e-33 148.3 382 33.0
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.4e-33 147.1 382 32.7
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.4e-33 147.1 357 36.1
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 5.8e-33 146.4 261 39.8
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 7.6e-33 146.0 267 34.8
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.3e-32 145.2 416 32.0
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.4e-31 141.7 268 40.7
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 4.2e-31 140.2 278 36.0
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.2e-30 138.7 443 30.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.6e-30 138.3 351 35.9
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.7e-30 137.5 353 32.3
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 2.7e-30 137.5 276 39.5
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.5e-30 137.1 271 32.8
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.0e-29 135.6 302 36.1
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 3.0e-29 134.0 285 30.5
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 5.1e-29 133.3 283 38.5
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 8.7e-29 132.5 352 31.0
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.5e-28 131.0 299 34.1
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 4.3e-28 130.2 296 31.1
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 9.6e-28 129.0 266 40.2
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.3e-27 128.6 179 45.3
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.7e-27 127.1 266 40.2
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 6.2e-27 126.3 267 36.7
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 6.2e-27 126.3 273 35.9
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.1e-26 125.6 260 35.4
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.4e-26 125.2 340 29.1
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 3.1e-26 124.0 377 32.4
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 6.9e-26 122.9 248 37.5
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 9.0e-26 122.5 339 36.3
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.6e-25 120.9 187 41.7
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 4.5e-25 120.2 268 32.5
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.3e-24 118.6 186 41.4
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.3e-24 118.6 286 28.7
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.7e-24 118.2 301 30.2
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.8e-24 117.1 297 36.7
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.9e-24 116.7 167 44.3
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.1e-23 115.5 191 44.5
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.4e-23 115.2 190 40.5
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.9e-23 114.8 226 35.8
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.7e-22 110.9 405 31.1
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 2.7e-22 110.9 265 34.0
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.5e-22 110.5 188 44.1
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.6e-22 110.2 207 42.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 7.9e-22 109.4 276 34.1
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 1.8e-21 108.2 196 37.2
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 8.7e-21 105.9 291 29.9
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.1e-20 105.5 189 36.0
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.9e-20 104.8 224 36.6
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 5.7e-20 103.2 357 33.3
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 9.6e-20 102.4 202 32.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 1.3e-19 102.1 362 28.7
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.8e-19 100.9 191 36.6
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 6.2e-19 99.8 406 29.3
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 2.4e-18 97.8 257 30.4
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 4.1e-18 97.1 186 41.9
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 9.0e-18 95.9 277 29.2
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.5e-17 95.1 191 35.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.6e-17 94.4 342 28.9
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.6e-17 94.4 191 35.1
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.3e-16 92.0 197 34.0
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.7e-16 91.7 89 49.4
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.9e-16 90.9 183 32.2
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 3.8e-16 90.5 183 39.3
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.2e-15 87.4 76 48.7
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.0e-13 82.4 269 26.8
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.3e-13 81.3 178 35.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.5e-12 78.6 81 42.0
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 5.7e-12 76.6 99 43.4
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 1.6e-11 75.1 156 32.7
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.1e-10 72.4 217 37.3
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 9.0e-10 69.3 146 29.5
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.0e-09 68.2 74 50.0
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.4e-09 67.4 90 34.4
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 3.8e-08 63.9 95 34.7
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 6.5e-08 63.2 62 43.5
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 7.2e-07 59.7 158 29.7
Sabra08G0016500 Salix brachista HOM05D002310 ORTHO05D002326 1.6e-06 58.5 83 31.3
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 2.1e-06 58.2 55 45.5
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 3.6e-06 57.4 90 28.9
FAN17G0990 Fragaria x ananassa HOM05D002310 ORTHO05D002326 6.1e-06 56.6 90 30.0
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 7.9e-06 56.2 138 32.6


User provided reference genes

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