Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.2e-175 619.8 334 100.0
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 3.5e-170 601.7 335 97.6
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.2e-165 586.6 336 95.5
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 3.9e-161 571.6 334 93.4
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.3e-156 556.6 338 89.9
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.8e-156 555.1 334 90.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 2.2e-148 529.3 334 87.7
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.4e-147 526.6 334 87.7
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 9.3e-147 523.9 334 86.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.1e-146 522.7 334 87.1
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.3e-145 520.0 334 86.5
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.8e-145 519.6 337 86.4
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 8.7e-145 517.3 344 84.6
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 9.3e-139 497.3 338 80.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 4.4e-112 408.7 299 72.2
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 8.2e-111 404.4 266 77.8
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 3.1e-110 402.5 267 76.4
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 4.1e-110 402.1 270 78.1
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 9.1e-110 401.0 325 67.7
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.6e-109 399.4 265 77.7
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 4.5e-109 398.7 262 76.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 5.9e-109 398.3 254 78.7
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 7.7e-109 397.9 266 77.1
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 3.8e-108 395.6 261 76.2
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 3.8e-108 395.6 261 77.0
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 8.5e-108 394.4 267 74.9
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.1e-107 394.0 275 73.1
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.1e-107 394.0 315 67.3
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.1e-107 394.0 269 75.1
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.5e-107 393.7 266 75.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.9e-107 393.3 328 65.5
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.9e-107 393.3 296 70.9
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 2.5e-107 392.9 262 77.5
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.2e-107 392.5 335 62.7
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.2e-107 392.1 261 76.6
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 5.5e-107 391.7 266 74.4
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 7.2e-107 391.3 261 76.2
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 7.2e-107 391.3 261 76.2
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 9.4e-107 391.0 262 75.2
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.6e-106 390.2 267 74.5
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.1e-106 389.8 262 74.0
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.6e-106 389.0 267 74.5
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 3.6e-106 389.0 303 68.6
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 4.7e-106 388.7 306 67.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.1e-106 388.3 267 74.2
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 8.0e-106 387.9 324 67.6
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.0e-105 387.5 325 65.8
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.0e-105 387.5 288 71.2
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.4e-105 387.1 267 73.4
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 1.8e-105 386.7 267 75.3
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.8e-105 386.7 272 72.1
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.8e-105 386.7 267 73.4
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.3e-105 386.3 258 76.7
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 5.2e-105 385.2 258 76.4
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 5.2e-105 385.2 310 68.4
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 5.2e-105 385.2 327 67.0
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 6.7e-105 384.8 258 77.9
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 4.4e-104 382.1 268 74.3
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 9.7e-104 380.9 272 71.3
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.3e-103 380.6 260 76.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.2e-103 379.8 264 76.1
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.2e-103 379.8 307 66.8
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.2e-103 379.8 309 68.0
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.2e-103 379.8 260 74.2
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.8e-103 379.4 328 63.1
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.8e-103 379.4 262 73.7
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.4e-102 377.1 262 72.9
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.4e-102 377.1 328 63.7
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 7.0e-102 374.8 333 63.1
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 7.0e-102 374.8 256 74.2
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 9.1e-102 374.4 263 73.8
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 9.1e-102 374.4 317 65.9
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.6e-101 373.6 329 64.7
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.0e-101 373.2 272 70.6
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.7e-101 372.9 285 70.9
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 3.5e-101 372.5 275 70.9
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.7e-100 370.2 270 70.4
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.7e-100 370.2 264 73.1
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.9e-100 369.4 351 60.4
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 6.5e-100 368.2 261 72.0
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 8.5e-100 367.9 308 65.6
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 2.5e-99 366.3 261 70.9
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 7.2e-99 364.8 336 61.9
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 7.2e-99 364.8 266 71.1
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 9.4e-99 364.4 313 64.9
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.6e-98 363.6 334 61.4
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 5.2e-97 358.6 240 76.2
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-96 356.7 281 67.3
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 3.4e-96 355.9 333 60.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 9.8e-96 354.4 364 57.1
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 2.2e-95 353.2 306 62.4
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 5.4e-94 348.6 324 61.4
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 9.1e-94 347.8 314 61.8
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 3.2e-91 339.3 238 72.3
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 3.2e-91 339.3 238 72.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.2e-88 330.9 301 61.8
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 4.9e-87 325.5 249 67.9
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 8.3e-87 324.7 238 68.1
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.1e-86 324.3 252 64.3
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.1e-83 314.3 420 46.4
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.8e-81 307.0 267 66.3
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.0e-77 293.5 205 73.7
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.3e-76 290.8 257 56.8
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 3.9e-76 289.3 205 75.6
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.5e-75 287.3 266 62.8
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 4.3e-75 285.8 203 72.9
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 5.6e-75 285.4 197 76.1
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.0e-72 276.9 274 57.3
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 4.4e-72 275.8 240 56.7
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 4.4e-72 275.8 301 53.5
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 7.5e-72 275.0 269 53.9
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 7.5e-72 275.0 181 78.5
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 7.8e-69 265.0 308 47.4
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 1.7e-68 263.8 240 56.7
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.7e-63 246.1 256 52.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 1.9e-54 217.2 216 58.8
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.1e-54 216.1 227 57.7
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 7.1e-54 215.3 243 49.0
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.5e-51 207.6 300 42.3
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 9.6e-51 204.9 168 69.0
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.6e-50 203.0 308 41.9
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.8e-49 200.7 167 62.3
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 3.6e-42 176.4 266 41.0
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 3.6e-42 176.4 152 61.8
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 8.1e-26 122.1 98 70.4
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.9e-19 100.9 73 68.5
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.4e-17 94.7 85 60.0
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 1.2e-16 91.7 72 65.3
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.4e-16 90.1 63 68.3
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 7.9e-13 79.0 72 59.7
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.0e-12 78.6 67 61.2
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 4.5e-08 63.2 88 51.1
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 7.7e-08 62.4 42 69.0
CARHR072110 Cardamine hirsuta HOM05D005699 ORTHO05D115977 6.5e-07 59.3 32 90.6
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 6.5e-07 59.3 229 27.9
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.4e-06 58.2 125 33.6
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 2.5e-06 57.4 39 64.1
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 3.2e-06 57.0 115 35.7
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 5.5e-06 56.2 212 31.1


User provided reference genes

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