Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 3.2e-165 585.1 318 100.0
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 7.7e-159 563.9 318 95.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.4e-152 543.1 318 92.5
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.2e-151 540.0 318 91.2
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.1e-149 533.5 315 89.2
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-149 531.9 318 89.3
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 7.2e-149 530.8 318 89.3
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 4.7e-148 528.1 318 89.0
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.7e-148 528.1 318 90.3
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 3.0e-147 525.4 318 89.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.0e-147 525.4 318 89.0
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 8.9e-147 523.9 318 88.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 8.9e-147 523.9 318 88.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.2e-146 523.5 318 88.4
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 3.4e-146 521.9 318 88.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 5.7e-146 521.2 318 88.1
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 7.0e-136 487.6 318 84.3
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.0e-135 486.1 291 89.3
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.2e-128 460.7 321 78.8
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.9e-122 440.7 307 80.5
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 4.5e-98 362.1 309 59.2
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.9e-97 359.4 312 60.3
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.8e-97 359.0 314 59.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 8.4e-97 357.8 313 60.1
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.1e-96 357.5 316 65.2
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.4e-96 357.1 312 60.6
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.9e-96 356.7 309 60.2
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.9e-96 356.7 308 65.6
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 4.2e-96 355.5 309 59.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.4e-96 355.1 311 64.3
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 5.4e-96 355.1 309 59.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 9.3e-96 354.4 307 59.6
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.5e-95 352.4 310 59.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 3.5e-95 352.4 307 59.9
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.6e-95 352.1 307 59.6
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.6e-95 352.1 312 58.0
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 6.0e-95 351.7 307 59.9
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.9e-95 351.3 312 58.0
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 7.9e-95 351.3 316 57.9
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.8e-94 350.1 307 59.6
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.0e-94 349.4 309 58.6
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.0e-94 349.4 312 58.3
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 3.9e-94 349.0 315 57.8
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.7e-94 347.8 315 57.8
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.1e-93 347.4 312 59.0
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-93 347.1 310 58.4
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.9e-93 346.7 315 58.1
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.3e-93 345.9 304 58.2
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.3e-93 345.5 308 56.2
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 4.3e-93 345.5 310 58.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 5.6e-93 345.1 297 64.0
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 5.6e-93 345.1 308 56.5
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 7.4e-93 344.7 311 57.6
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.1e-92 343.2 312 58.0
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 2.8e-92 342.8 308 55.8
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 4.8e-92 342.0 306 56.5
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 4.8e-92 342.0 309 57.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 6.2e-92 341.7 307 56.4
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 8.1e-92 341.3 302 58.6
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.4e-91 340.5 307 57.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 6.9e-91 338.2 315 56.5
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 2.0e-90 336.7 307 55.4
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.6e-90 336.3 307 55.0
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.4e-90 335.9 328 54.9
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.4e-90 335.9 315 56.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 7.6e-90 334.7 307 55.4
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 9.9e-90 334.3 307 55.4
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 9.9e-90 334.3 309 55.7
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.7e-89 333.6 315 55.9
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.2e-89 333.2 315 57.8
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 3.8e-89 332.4 307 57.7
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.4e-88 329.7 309 56.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 9.3e-88 327.8 315 54.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.7e-87 326.2 315 56.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.8e-86 323.6 270 61.5
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.0e-86 322.8 363 49.6
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 5.1e-86 322.0 314 52.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 6.7e-86 321.6 317 52.7
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 6.7e-86 321.6 329 53.8
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.5e-85 320.5 315 54.6
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.5e-85 320.5 308 55.2
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.5e-85 320.5 276 57.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 5.6e-85 318.5 307 54.4
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 9.6e-85 317.8 307 54.4
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.3e-84 317.4 313 54.0
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.6e-84 317.0 315 52.7
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.6e-84 317.0 315 52.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.1e-84 316.6 281 57.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 3.7e-84 315.8 318 51.6
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 8.2e-84 314.7 276 58.3
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.4e-83 313.2 321 50.2
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.5e-82 310.5 308 52.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.5e-82 308.9 283 54.8
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.0e-81 307.8 328 51.8
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.7e-81 307.0 305 53.4
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.7e-81 307.0 277 56.0
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.2e-81 306.6 278 55.4
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 4.2e-80 302.4 328 51.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 9.3e-80 301.2 305 51.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.3e-78 297.4 276 61.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 3.9e-78 295.8 333 48.6
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 6.7e-78 295.0 276 54.7
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.1e-77 294.3 276 57.6
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.5e-77 293.9 308 51.6
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 4.3e-77 292.4 317 50.8
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 8.2e-76 288.1 276 53.3
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.4e-75 287.3 307 51.5
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 3.4e-74 282.7 247 65.2
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 3.4e-74 282.7 241 61.0
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.7e-71 273.1 241 59.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 4.3e-69 265.8 234 59.0
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.4e-67 260.0 286 50.3
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.2e-66 257.7 247 53.4
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.5e-66 255.8 258 51.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 5.0e-65 252.3 267 49.1
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 6.7e-62 241.9 222 58.1
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.2e-60 236.9 319 40.4
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 2.0e-58 230.3 325 42.8
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 7.7e-58 228.4 279 44.8
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.3e-57 227.6 308 44.5
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 9.4e-56 221.5 277 42.2
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.8e-52 209.9 191 56.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.2e-45 188.0 195 51.3
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 9.7e-45 184.9 167 55.1
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 4.1e-43 179.5 137 65.7
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 7.5e-37 158.7 109 64.2
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 8.3e-36 155.2 281 36.7
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 5.2e-30 136.0 196 45.4
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 6.6e-25 119.0 98 61.2
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 4.7e-23 112.8 113 49.6
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 5.2e-06 56.2 296 25.0


User provided reference genes

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