Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 7.8e-58 226.9 111 100.0
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.4e-38 162.2 109 76.1
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.9e-34 147.1 101 75.2
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.9e-28 127.9 92 70.7
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.3e-17 93.2 122 50.8
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.3e-17 93.2 122 50.8
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.3e-17 92.4 122 49.2
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-17 92.0 122 50.0
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 3.0e-17 92.0 122 50.0
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 3.0e-17 92.0 116 47.4
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.0e-17 92.0 116 47.4
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.0e-17 92.0 116 47.4
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.1e-17 91.3 115 47.8
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-16 90.1 138 42.8
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.5e-16 89.7 109 51.4
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.5e-16 89.7 125 44.8
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-16 89.4 116 46.6
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.9e-16 89.4 108 44.4
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.5e-16 89.0 114 43.9
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 3.3e-16 88.6 115 47.0
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.3e-16 88.6 115 44.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.3e-16 88.2 126 44.4
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.3e-16 88.2 113 44.2
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 7.4e-16 87.4 122 47.5
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 7.4e-16 87.4 115 46.1
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 7.4e-16 87.4 121 48.8
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 7.4e-16 87.4 116 49.1
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 7.4e-16 87.4 115 45.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 9.7e-16 87.0 122 46.7
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.3e-15 86.7 108 50.9
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.3e-15 86.7 138 44.2
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-15 86.7 118 43.2
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.6e-15 86.3 125 45.6
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-15 86.3 117 43.6
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.6e-15 86.3 122 45.9
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.6e-15 86.3 132 42.4
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.7e-15 85.1 124 46.0
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.7e-15 85.1 76 57.9
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 4.8e-15 84.7 124 46.0
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.8e-15 84.7 121 43.8
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.8e-15 84.7 117 43.6
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.3e-15 84.3 124 46.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-14 83.2 121 43.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.4e-14 83.2 116 41.4
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.8e-14 82.8 106 45.3
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.8e-14 82.8 113 44.2
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.1e-14 82.0 120 47.5
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.1e-14 82.0 111 45.9
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.1e-14 81.6 51 72.5
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 5.3e-14 81.3 114 43.0
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 5.3e-14 81.3 76 56.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 6.9e-14 80.9 121 44.6
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 6.9e-14 80.9 76 55.3
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.9e-14 80.9 118 44.1
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.5e-13 79.7 98 45.9
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.0e-13 79.3 125 40.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.0e-13 79.3 99 45.5
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-13 79.0 111 47.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.6e-13 79.0 135 38.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.4e-13 78.6 52 71.2
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.4e-13 78.6 105 44.8
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 3.4e-13 78.6 122 41.0
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-13 78.6 115 42.6
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-13 78.6 116 42.2
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.9e-13 77.8 82 52.4
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.9e-13 77.8 111 46.8
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 7.6e-13 77.4 51 72.5
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 7.6e-13 77.4 51 72.5
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 7.6e-13 77.4 110 42.7
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.6e-13 77.4 116 42.2
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 7.6e-13 77.4 104 47.1
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.0e-12 77.0 76 52.6
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.0e-12 77.0 76 52.6
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.0e-12 77.0 121 40.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.3e-12 76.6 127 39.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.3e-12 76.6 133 40.6
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.3e-12 76.6 111 45.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.7e-12 76.3 102 46.1
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 2.2e-12 75.9 52 67.3
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 2.2e-12 75.9 90 47.8
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 2.9e-12 75.5 117 41.9
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 3.8e-12 75.1 116 42.2
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 5.0e-12 74.7 115 41.7
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 8.5e-12 73.9 80 46.2
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.4e-11 73.2 55 61.8
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.2e-11 72.0 106 43.4
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 3.2e-11 72.0 123 40.7
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 4.2e-11 71.6 104 44.2
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 4.2e-11 71.6 92 43.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 4.2e-11 71.6 52 63.5
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 4.2e-11 71.6 51 64.7
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 4.2e-11 71.6 83 50.6
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 9.4e-11 70.5 72 50.0
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.2e-10 70.1 47 68.1
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-10 70.1 103 37.9
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-10 70.1 103 37.9
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.6e-10 69.7 115 40.0
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.1e-10 69.3 103 43.7
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.7e-10 68.9 53 64.2
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.6e-10 68.2 50 60.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 4.6e-10 68.2 83 49.4
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.0e-09 67.0 95 37.9
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.4e-09 66.6 110 39.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.8e-09 66.2 50 62.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.3e-09 65.9 100 39.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.0e-09 65.5 50 56.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.0e-09 65.5 50 62.0
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 3.0e-09 65.5 100 40.0
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 8.8e-09 63.9 71 49.3
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.1e-08 63.5 88 44.3
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-08 63.2 49 63.3
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-08 63.2 49 63.3
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-08 63.2 49 63.3
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.9e-08 62.8 50 58.0
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.9e-08 62.8 72 48.6
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.9e-08 62.8 72 48.6
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.5e-08 62.4 50 54.0
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 3.3e-08 62.0 106 40.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 4.3e-08 61.6 70 45.7
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 7.4e-08 60.8 103 38.8
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 9.7e-08 60.5 43 58.1
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 4.8e-07 58.2 76 36.8
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 6.3e-07 57.8 50 56.0
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-06 57.0 74 40.5
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.1e-06 57.0 112 35.7
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.4e-06 56.6 58 46.6
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 1.4e-06 56.6 37 64.9
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 4.1e-06 55.1 51 52.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.3e-06 54.7 60 43.3


User provided reference genes

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