Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1749.6 856 100.0
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1643.6 858 93.5
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1624.8 858 93.4
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1515.0 866 85.2
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1515.0 861 85.6
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1499.6 862 84.3
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1492.6 862 83.8
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1492.2 862 83.8
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1491.1 862 83.6
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1485.7 862 83.5
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1484.5 862 83.5
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1444.9 860 80.3
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1425.6 860 80.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 690 91.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1292.3 863 70.8
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1269.6 865 71.1
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 860 70.5
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 860 69.8
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1260.7 869 69.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 861 69.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 867 69.3
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1251.9 861 69.3
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1250.0 861 69.2
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 869 68.7
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 866 68.7
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 858 69.2
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 858 69.2
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 866 68.6
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 858 68.8
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 858 68.2
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 863 68.0
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 866 67.3
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 865 67.2
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 868 67.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 873 67.2
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1215.3 868 66.7
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 865 66.8
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 862 66.8
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 876 65.4
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 867 67.1
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 863 67.7
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 871 66.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 866 66.6
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 860 67.3
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1208.0 865 67.5
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1206.0 859 66.2
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 865 66.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1202.2 863 67.2
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1198.7 865 67.9
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 858 66.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 872 66.3
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 865 65.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 864 66.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 872 65.9
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 858 66.9
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 857 66.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 864 66.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1186.8 860 65.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1186.8 857 65.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 866 66.4
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 870 65.5
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 867 66.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 858 66.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1181.0 866 65.8
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1181.0 859 65.9
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1175.6 863 66.0
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1172.9 865 66.2
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 865 65.5
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 865 65.4
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1171.4 863 65.1
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 884 65.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 876 65.6
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1167.1 868 64.2
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1166.8 874 64.2
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1164.1 863 65.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1162.1 862 64.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1159.4 865 65.0
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1158.3 863 65.2
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1157.5 862 64.2
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1157.1 865 64.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1154.4 860 65.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1154.0 871 64.5
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 884 62.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1150.2 857 65.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1147.5 868 64.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1141.7 862 64.3
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1135.6 865 62.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1111.3 861 63.2
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1094.3 865 60.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1085.1 827 63.6
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 5.9e-312 1074.3 840 63.3
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 5.4e-300 1034.2 744 67.6
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 6.0e-299 1030.8 857 58.3
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 6.2e-296 1020.8 859 60.2
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 8.1e-296 1020.4 646 73.5
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.6e-291 1006.1 858 57.3
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 6.6e-290 1000.7 691 67.7
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 8.4e-277 957.2 859 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 3.0e-274 948.7 868 53.3
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.5e-273 946.4 855 55.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.1e-263 912.1 861 51.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.2e-195 687.6 759 46.9
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.5e-156 557.8 388 68.6
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 6.9e-146 522.3 473 56.0
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.4e-135 488.0 460 56.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.0e-110 402.5 359 56.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.1e-81 308.1 307 54.4
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 6.2e-62 243.4 168 67.9
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.7e-59 235.3 204 56.9
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 2.4e-45 188.3 175 56.6
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.1e-40 170.6 171 50.3
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.1e-39 169.5 195 48.2
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 9.4e-34 149.8 216 39.8
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.2e-27 128.6 149 47.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.7e-25 121.7 84 67.9
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.1e-23 116.3 86 66.3
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.6e-23 115.2 120 53.3
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 9.7e-23 113.2 68 73.5
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.6e-20 105.1 90 58.9
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 2.2e-19 102.1 81 59.3
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 6.5e-19 100.5 111 51.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-14 85.5 197 26.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 4.1e-13 81.3 319 23.8
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.3e-11 76.3 311 25.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 5.0e-11 74.3 328 22.9
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.0e-11 74.3 304 25.7
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.9e-10 72.4 328 24.1
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.5e-10 72.0 301 22.3
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.5e-10 72.0 333 23.4
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.5e-10 72.0 67 55.2
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 4.7e-09 67.8 94 42.6
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.0e-08 66.6 302 25.8
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.3e-08 65.5 298 23.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 5.2e-08 64.3 266 25.9
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.2e-08 64.3 312 22.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.7e-07 60.8 32 78.1
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 5.7e-07 60.8 216 26.4
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.7e-06 59.3 220 25.9
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.2e-06 58.9 167 25.7


User provided reference genes

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