Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 0.0e+00 1149.8 683 100.0
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.4e-202 710.3 814 63.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.0e-168 596.3 519 68.2
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.5e-119 434.5 500 55.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.0e-115 419.5 495 53.5
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.5e-111 407.9 689 41.9
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 5.1e-83 313.2 539 46.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 4.3e-82 310.1 539 45.8
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.6e-81 308.1 489 45.8
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 2.4e-80 304.3 532 42.9
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 3.1e-80 303.9 546 41.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 2.6e-79 300.8 563 39.4
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.7e-49 201.8 583 31.4
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.0e-35 156.0 302 38.4
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 8.8e-35 152.9 223 41.7
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 5.7e-34 150.2 188 45.7
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.2e-33 148.3 222 41.0
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 8.3e-33 146.4 246 39.4
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 4.1e-32 144.1 261 39.8
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.0e-31 141.7 192 44.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.9e-30 137.9 288 34.7
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 3.8e-30 137.5 194 43.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.0e-30 137.1 247 37.2
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.9e-29 135.2 274 37.2
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 7.2e-29 133.3 204 40.7
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 7.2e-29 133.3 368 33.4
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 7.2e-29 133.3 194 41.2
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 6.1e-28 130.2 199 39.2
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.4e-27 129.0 250 38.0
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.3e-27 128.3 475 27.6
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 8.8e-27 126.3 491 28.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.5e-26 125.6 217 37.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.4e-26 124.4 192 37.5
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.3e-25 122.5 300 32.0
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.2e-23 115.9 299 29.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.7e-23 114.8 258 31.8
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.3e-22 111.7 272 34.9
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.8e-22 110.9 466 27.5
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 3.8e-22 110.9 201 36.8
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.9e-21 108.6 283 30.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 5.5e-21 107.1 284 30.3
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 7.2e-21 106.7 283 30.4
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.6e-20 105.5 135 45.9
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.2e-18 99.4 279 29.0
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-18 99.4 206 31.6
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.3e-17 95.9 190 34.2
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.8e-17 94.7 108 44.4
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.8e-17 94.7 220 34.5
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.7e-17 94.4 126 40.5
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 3.7e-17 94.4 198 37.4
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 6.3e-17 93.6 200 30.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.1e-16 91.3 108 41.7
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 9.2e-16 89.7 117 37.6
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.0e-15 88.6 187 33.7
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.7e-15 88.2 189 32.8
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.5e-15 87.4 102 40.2
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.9e-15 87.0 134 38.1
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 5.9e-15 87.0 209 30.1
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 7.8e-15 86.7 195 31.3
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.0e-14 86.3 229 28.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.3e-14 85.9 464 23.7
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.7e-14 85.5 154 33.8
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.7e-14 85.5 240 28.8
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.3e-14 85.1 108 46.3
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.9e-14 84.7 151 36.4
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.9e-14 84.7 138 34.8
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 5.0e-14 84.0 102 44.1
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 5.0e-14 84.0 213 31.5
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 6.6e-14 83.6 151 33.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 8.6e-14 83.2 191 31.9
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-13 82.8 143 30.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.5e-13 82.4 212 32.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.5e-13 82.4 102 38.2
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 2.5e-13 81.6 120 41.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.3e-13 81.3 158 33.5
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 4.3e-13 80.9 202 31.2
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.3e-13 80.9 101 42.6
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 4.3e-13 80.9 196 30.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 5.6e-13 80.5 153 30.1
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 5.6e-13 80.5 130 32.3
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 9.5e-13 79.7 186 31.7
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 9.5e-13 79.7 183 31.7
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 9.5e-13 79.7 105 40.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.6e-12 79.0 99 41.4
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.6e-12 79.0 112 35.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.6e-12 79.0 141 34.8
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.6e-12 79.0 99 41.4
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.6e-12 79.0 154 31.2
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-12 79.0 149 28.2
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.1e-12 78.6 144 30.6
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.8e-12 78.2 162 27.8
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 3.6e-12 77.8 144 30.6
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 3.6e-12 77.8 181 28.2
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.7e-12 77.4 193 28.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 6.1e-12 77.0 102 39.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.0e-12 76.6 104 34.6
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.0e-11 76.3 99 40.4
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.0e-11 76.3 261 28.7
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.4e-11 75.9 257 28.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.4e-11 75.9 104 40.4
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.4e-11 75.9 149 32.9
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.4e-11 75.9 167 31.7
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 1.8e-11 75.5 117 41.0
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.1e-11 74.7 101 34.7
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.1e-11 74.7 264 26.1
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 3.1e-11 74.7 101 41.6
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.0e-11 74.3 116 33.6
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 4.0e-11 74.3 108 38.9
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.2e-11 73.9 200 27.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.2e-11 73.9 107 30.8
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.8e-11 73.6 468 22.2
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 6.8e-11 73.6 142 33.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 8.9e-11 73.2 152 33.6
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 8.9e-11 73.2 147 32.0
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.5e-10 72.4 199 29.6
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-10 72.4 195 29.7
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 1.5e-10 72.4 150 32.7
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 2.0e-10 72.0 112 38.4
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 2.0e-10 72.0 158 34.2
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 3.4e-10 71.2 101 40.6
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 3.4e-10 71.2 138 37.7
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 4.4e-10 70.9 100 39.0
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.4e-10 70.9 146 32.2
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 4.4e-10 70.9 114 37.7
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 5.8e-10 70.5 224 25.9
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 5.8e-10 70.5 126 34.1
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.5e-10 70.1 144 30.6
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.5e-10 70.1 144 30.6
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 7.5e-10 70.1 212 27.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 9.8e-10 69.7 101 39.6
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 1.3e-09 69.3 108 37.0
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.7e-09 68.9 115 35.7
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.2e-09 68.6 141 31.9
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.2e-09 68.6 153 28.1
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.2e-09 68.6 102 33.3
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.9e-09 67.4 146 32.2
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.9e-09 67.4 167 29.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 4.9e-09 67.4 101 37.6
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.4e-09 67.0 126 33.3
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.4e-08 65.9 101 36.6
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.9e-08 65.5 145 31.7
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.4e-08 65.1 150 31.3
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.1e-08 64.3 463 22.9
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.4e-08 63.9 105 33.3
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 7.0e-08 63.5 132 31.1
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.0e-08 63.5 105 36.2
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 9.2e-08 63.2 109 35.8
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 9.2e-08 63.2 106 34.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.2e-07 62.8 306 23.2
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-07 62.4 104 33.7
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 1.6e-07 62.4 109 38.5
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-07 62.4 447 21.3
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.6e-07 62.4 112 30.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.0e-07 62.0 104 33.7
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 2.7e-07 61.6 66 42.4
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 2.7e-07 61.6 94 34.0
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.5e-07 61.2 113 31.0
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.6e-07 60.8 134 31.3
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 6.0e-07 60.5 91 37.4
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 6.0e-07 60.5 122 31.1
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 7.8e-07 60.1 101 36.6
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.7e-06 58.9 104 26.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.7e-06 58.9 104 26.9
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-06 58.5 128 28.9
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.3e-06 58.5 125 31.2
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 3.0e-06 58.2 144 30.6
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.0e-06 58.2 101 29.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 3.0e-06 58.2 101 29.7
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 3.0e-06 58.2 91 35.2
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.9e-06 57.8 104 30.8
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 3.9e-06 57.8 104 30.8
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.0e-06 57.4 112 29.5
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 6.6e-06 57.0 101 32.7
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 8.6e-06 56.6 117 31.6
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.6e-06 56.6 145 31.0


User provided reference genes

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