Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.3e-117 426.4 219 100.0
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 3.0e-101 372.1 219 88.6
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 3.0e-93 345.5 221 81.0
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 2.1e-91 339.3 224 81.7
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.9e-88 328.9 219 78.5
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 2.3e-77 292.7 220 72.7
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.5e-76 290.0 218 71.6
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 5.3e-74 281.6 219 70.3
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.5e-73 280.0 219 69.4
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.5e-73 280.0 219 69.4
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 2.0e-73 279.6 219 70.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 2.4e-71 272.7 237 67.1
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 3.5e-70 268.9 217 67.7
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 1.6e-67 260.0 217 64.5
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 9.0e-58 227.6 221 57.5
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.2e-57 227.3 217 57.6
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 7.6e-57 224.6 219 55.3
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.0e-56 224.2 223 56.1
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.3e-56 223.8 221 57.0
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 5.0e-56 221.9 221 56.6
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 8.5e-56 221.1 216 57.4
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 1.9e-55 219.9 220 55.0
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.2e-55 219.2 215 58.6
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 3.2e-55 219.2 213 54.9
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 4.2e-55 218.8 218 57.3
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 4.2e-55 218.8 216 56.0
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 6.1e-54 214.9 220 55.0
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.9e-53 212.2 214 56.1
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 8.7e-53 211.1 221 53.4
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 2.5e-52 209.5 217 54.8
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 2.5e-52 209.5 217 54.4
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.6e-51 206.8 215 52.1
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.2e-51 206.5 219 50.7
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.2e-51 206.5 216 53.7
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.8e-51 205.3 219 50.7
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 4.8e-51 205.3 212 53.8
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 6.3e-51 204.9 214 53.3
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 8.2e-51 204.5 217 54.4
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 8.2e-51 204.5 213 54.0
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 8.2e-51 204.5 214 52.8
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.1e-50 204.1 219 52.1
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.4e-50 203.8 220 50.9
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 3.1e-50 202.6 216 52.8
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 4.1e-50 202.2 222 52.7
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 4.1e-50 202.2 215 53.0
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 4.1e-50 202.2 214 50.9
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 6.9e-50 201.4 218 51.8
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 9.1e-50 201.1 233 51.5
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 9.1e-50 201.1 218 50.9
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.2e-49 200.7 215 53.0
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.2e-49 200.7 217 53.5
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.0e-48 197.6 218 53.2
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 2.2e-48 196.4 227 52.4
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 3.8e-48 195.7 213 52.1
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 5.0e-48 195.3 222 51.4
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.1e-47 194.1 217 53.0
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 1.4e-47 193.7 142 69.0
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 3.2e-47 192.6 217 50.2
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.2e-47 192.6 214 51.9
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.2e-47 192.2 217 51.2
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 9.4e-47 191.0 214 51.9
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 1.6e-46 190.3 214 50.5
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 2.1e-46 189.9 220 49.1
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 7.9e-46 188.0 251 46.6
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 7.9e-46 188.0 213 50.7
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.0e-45 187.6 215 49.8
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 2.3e-45 186.4 213 50.2
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 6.7e-45 184.9 214 49.5
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 4.4e-44 182.2 200 51.5
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 9.7e-44 181.0 285 41.8
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 1.7e-43 180.3 139 61.9
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.7e-43 180.3 217 48.8
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.7e-43 179.1 188 54.8
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.1e-42 177.6 217 47.9
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.8e-42 176.8 220 47.3
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 2.4e-42 176.4 225 47.1
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 9.1e-42 174.5 252 45.6
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 9.1e-42 174.5 224 44.6
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 2.6e-41 172.9 141 58.2
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 3.4e-41 172.6 218 47.2
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 4.5e-41 172.2 238 44.5
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.7e-40 170.2 126 69.0
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.2e-40 169.9 213 46.5
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 2.2e-40 169.9 228 44.3
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 3.8e-40 169.1 215 47.4
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 5.0e-40 168.7 257 43.2
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.6e-38 163.7 214 46.7
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.8e-37 160.2 217 44.2
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.3e-37 159.8 216 45.4
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 9.1e-34 147.9 219 42.5
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 9.1e-34 147.9 188 45.7
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.5e-31 140.6 237 39.2
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 2.5e-31 139.8 109 64.2
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.6e-30 137.1 156 53.2
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 5.3e-26 122.1 216 39.8
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.6e-22 110.5 145 48.3
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 6.1e-22 108.6 128 48.4
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.3e-21 106.7 145 45.5
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 4.0e-21 105.9 138 50.7
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 5.2e-21 105.5 153 40.5
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 1.1e-18 97.8 80 60.0
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 7.7e-17 91.7 97 51.5
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.9e-16 89.7 213 33.3
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 7.2e-15 85.1 57 70.2
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 3.6e-14 82.8 216 32.9
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 1.8e-13 80.5 70 55.7
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.9e-11 72.4 47 70.2
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 2.4e-10 70.1 84 42.9
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 7.0e-10 68.6 142 29.6
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 7.0e-10 68.6 142 28.9
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 7.0e-10 68.6 84 42.9
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 3.5e-09 66.2 138 29.7
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 4.5e-09 65.9 145 28.3
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 7.8e-09 65.1 137 29.2
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 2.9e-08 63.2 140 28.6
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 2.9e-08 63.2 150 27.3
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 5.0e-08 62.4 139 29.5
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 5.0e-08 62.4 139 27.3
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 5.0e-08 62.4 139 27.3
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.6e-08 61.6 102 37.3
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 8.6e-08 61.6 168 24.4
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 1.1e-07 61.2 143 26.6
A02p26870 Brassica napus HOM05D005920 ORTHO05D007211 1.5e-07 60.8 139 26.6
BraA02t07698Z Brassica rapa HOM05D005920 ORTHO05D007211 1.5e-07 60.8 139 26.6
Prupe.1G499100 Prunus persica HOM05D005920 ORTHO05D007211 1.5e-07 60.8 135 26.7
Thhalv10028662m.g Eutrema salsugineum HOM05D005920 ORTHO05D007211 1.9e-07 60.5 142 26.1
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 1.9e-07 60.5 121 30.6
CiPaw.06G030600 Carya illinoinensis HOM05D005920 ORTHO05D007211 5.6e-07 58.9 139 24.5
MD15G1349900 Malus domestica HOM05D005920 ORTHO05D007211 5.6e-07 58.9 139 25.2
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 7.3e-07 58.5 157 25.5
Lsat_1_v5_gn_6_112921 Lactuca sativa HOM05D005920 ORTHO05D007211 7.3e-07 58.5 143 26.6
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 7.3e-07 58.5 140 29.3
Prupe.5G076500 Prunus persica HOM05D002462 ORTHO05D002893 9.5e-07 58.2 129 28.7
SMO134G0039 Selaginella moellendorffii HOM05D005920 ORTHO05D007211 1.2e-06 57.8 142 30.3
PGSC0003DMG400012480 Solanum tuberosum HOM05D002462 ORTHO05D002893 1.2e-06 57.8 129 27.1
DCAR_008462 Daucus carota HOM05D002462 ORTHO05D002893 1.6e-06 57.4 129 28.7
DCAR_008463 Daucus carota HOM05D002462 ORTHO05D002893 1.6e-06 57.4 129 28.7
Duzib093G1431 Durio zibethinus HOM05D005920 ORTHO05D007211 1.6e-06 57.4 132 25.8
MSTRG.1445 Avicennia marina HOM05D005920 ORTHO05D007211 2.1e-06 57.0 140 25.7
Thecc.08G124700 Theobroma cacao HOM05D005920 ORTHO05D007211 2.8e-06 56.6 129 24.8
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 3.6e-06 56.2 140 27.1
DCAR_006811 Daucus carota HOM05D002462 ORTHO05D002893 3.6e-06 56.2 129 27.9
Atru.chr13.1453_Atru.chr13.1454 Acer truncatum HOM05D005920 ORTHO05D007211 6.1e-06 55.5 136 27.2
Atru.chr13.1476_Atru.chr13.1477 Acer truncatum HOM05D005920 ORTHO05D007211 6.1e-06 55.5 136 27.2
Manes.18G076800 Manihot esculenta HOM05D005920 ORTHO05D007211 6.1e-06 55.5 130 26.2
Nitab4.5_0004059g0030 Nicotiana tabacum HOM05D002462 ORTHO05D002893 6.1e-06 55.5 120 26.7
PGR031G0384 Punica granatum HOM05D002462 ORTHO05D002893 6.1e-06 55.5 129 27.9
TWI56G1135 Tripterygium wilfordii HOM05D005920 ORTHO05D007211 6.1e-06 55.5 134 21.6
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 8.0e-06 55.1 117 27.4
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 8.0e-06 55.1 127 24.4
Lsat_1_v5_gn_4_142200 Lactuca sativa HOM05D000868 ORTHO05D000711 8.0e-06 55.1 94 29.8


User provided reference genes

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