Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G76705 Arabidopsis thaliana HOM05D000156 ORTHO05D002715 1.0e-84 316.6 154 100.0
AT5G03960 Arabidopsis thaliana HOM05D000156 ORTHO05D002715 4.7e-37 158.3 206 48.1
AL6G13550 Arabidopsis lyrata HOM05D000156 ORTHO05D002715 5.2e-36 154.8 206 47.6
CARHR209320 Cardamine hirsuta HOM05D000156 ORTHO05D002715 1.3e-31 140.2 206 45.1
Thhalv10013765m.g Eutrema salsugineum HOM05D000156 ORTHO05D002715 1.1e-30 137.1 199 44.7
Sp6g38790 Schrenkiella parvula HOM05D000156 ORTHO05D002715 9.9e-27 124.0 202 43.1
C02p01640 Brassica napus HOM05D000156 ORTHO05D002715 2.2e-26 122.9 250 37.6
BcaC03g12969 Brassica carinata HOM05D000156 ORTHO05D002715 2.9e-26 122.5 251 37.5
BolC2t06129H Brassica oleracea HOM05D000156 ORTHO05D002715 2.9e-26 122.5 251 37.5
Carub.0006s0290 Capsella rubella HOM05D000156 ORTHO05D002715 4.9e-26 121.7 197 43.7
C09p72980 Brassica napus HOM05D000156 ORTHO05D002715 8.4e-26 120.9 269 36.4
BolC9t60033H Brassica oleracea HOM05D000156 ORTHO05D002715 8.4e-26 120.9 269 36.4
BcaB05g21791 Brassica carinata HOM05D000156 ORTHO05D002715 3.5e-24 115.5 189 40.7
A10p32170 Brassica napus HOM05D000156 ORTHO05D002715 1.0e-23 114.0 267 35.2
BraA10t45261Z Brassica rapa HOM05D000156 ORTHO05D002715 1.0e-23 114.0 267 35.2
BraA02t04795Z Brassica rapa HOM05D000156 ORTHO05D002715 1.7e-23 113.2 276 34.8
BcaC06g32098 Brassica carinata HOM05D000156 ORTHO05D002715 3.6e-21 105.5 289 33.6
BolC9t60025H Brassica oleracea HOM05D007779 ORTHO05D009863 1.6e-16 90.1 52 84.6
THA.LOC104823218 Tarenaya hassleriana HOM05D000156 ORTHO05D002715 3.5e-16 89.0 59 69.5
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 2.8e-13 79.3 64 67.2
C09p72900 Brassica napus HOM05D007779 ORTHO05D009863 4.8e-13 78.6 75 60.0
BolC9t60028H Brassica oleracea HOM05D000156 ORTHO05D002715 1.5e-11 73.6 72 56.9
QL07p005292 Quercus lobata HOM05D000156 ORTHO05D002715 2.6e-11 72.8 47 70.2
QL07p005574 Quercus lobata HOM05D000156 ORTHO05D002715 2.6e-11 72.8 47 70.2
Atru.chr1.1185 Acer truncatum HOM05D000156 ORTHO05D002715 1.7e-10 70.1 72 55.6
Ciclev10005065m.g Citrus clementina HOM05D000156 ORTHO05D002715 2.9e-10 69.3 48 64.6
Manes.09G011664 Manihot esculenta HOM05D000156 ORTHO05D002715 3.8e-10 68.9 49 59.2
Manes.09G011853 Manihot esculenta HOM05D000156 ORTHO05D002715 3.8e-10 68.9 49 59.2
Manes.09G014980 Manihot esculenta HOM05D000156 ORTHO05D002715 3.8e-10 68.9 49 59.2
Manes.09G015700 Manihot esculenta HOM05D000156 ORTHO05D002715 3.8e-10 68.9 49 59.2
Manes.09G016741 Manihot esculenta HOM05D000156 ORTHO05D002715 3.8e-10 68.9 49 59.2
Thecc.05G145700 Theobroma cacao HOM05D000156 ORTHO05D002715 1.1e-09 67.4 55 56.4
TWI53G1812 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 1.4e-09 67.0 56 58.9
Manes.09G016644 Manihot esculenta HOM05D000156 ORTHO05D002715 2.4e-09 66.2 49 57.1
CiPaw.09G041800 Carya illinoinensis HOM05D000156 ORTHO05D002715 3.2e-09 65.9 52 57.7
Haze_19744 Corylus avellana HOM05D000156 ORTHO05D002715 5.5e-09 65.1 47 61.7
Cfa016757 Carpinus fangiana HOM05D000156 ORTHO05D002715 2.1e-08 63.2 54 55.6
Lj5g0017611 Lotus japonicus HOM05D000156 ORTHO05D002715 4.6e-08 62.0 56 51.8
CAN.G1237.7 Capsicum annuum HOM05D000156 ORTHO05D002715 6.0e-08 61.6 55 50.9
AUR62026117 Chenopodium quinoa HOM05D000156 ORTHO05D002715 7.9e-08 61.2 104 38.5
COL.COLO4_21310 Corchorus olitorius HOM05D000156 ORTHO05D002715 7.9e-08 61.2 70 44.3
Duzib128G0354 Durio zibethinus HOM05D000156 ORTHO05D002715 7.9e-08 61.2 55 50.9
Manes.08G054200 Manihot esculenta HOM05D000156 ORTHO05D002715 7.9e-08 61.2 49 55.1
Glyma.10G106000 Glycine max HOM05D000156 ORTHO05D002715 1.0e-07 60.8 55 50.9
TWI77G0232 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 1.0e-07 60.8 47 59.6
GSVIVG01033546001 Vitis vinifera HOM05D000156 ORTHO05D002715 1.0e-07 60.8 49 59.2
FvH4_6g24720 Fragaria vesca HOM05D000156 ORTHO05D002715 1.3e-07 60.5 47 63.8
FAN09G2368 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.3e-07 60.5 47 63.8
FAN14G0802 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.3e-07 60.5 47 63.8
RcHm_v2.0_Chr3g0484271 Rosa chinensis HOM05D000156 ORTHO05D002715 1.3e-07 60.5 47 63.8
AL1G13500 Arabidopsis lyrata HOM05D000156 ORTHO05D002715 1.8e-07 60.1 29 96.6
FAN05G2634 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.8e-07 60.1 47 63.8
Medtr1g051810 Medicago truncatula HOM05D000156 ORTHO05D002715 1.8e-07 60.1 48 56.2
Nitab4.5_0000826g0150 Nicotiana tabacum HOM05D000156 ORTHO05D002715 1.8e-07 60.1 61 47.5
VMungo0720G0783 Vigna mungo HOM05D000156 ORTHO05D002715 1.8e-07 60.1 48 52.1
MELO3C009812.2 Cucumis melo HOM05D000156 ORTHO05D002715 2.3e-07 59.7 68 48.5
Solyc04g016480.3 Solanum lycopersicum HOM05D000156 ORTHO05D002715 2.3e-07 59.7 63 46.0
Sopen04g008560 Solanum pennellii HOM05D000156 ORTHO05D002715 2.3e-07 59.7 63 46.0
GSVIVG01033548001 Vitis vinifera HOM05D000156 ORTHO05D002715 2.3e-07 59.7 63 46.0
ClCG10G015630 Citrullus lanatus HOM05D000156 ORTHO05D002715 3.0e-07 59.3 47 59.6
Gohir.A13G011300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 3.0e-07 59.3 48 52.1
Gohir.D13G012000 Gossypium hirsutum HOM05D000156 ORTHO05D002715 3.0e-07 59.3 48 52.1
Gorai.013G013200 Gossypium raimondii HOM05D000156 ORTHO05D002715 3.0e-07 59.3 48 52.1
Prupe.7G050600 Prunus persica HOM05D000156 ORTHO05D002715 3.9e-07 58.9 49 57.1
PGSC0003DMG400012720 Solanum tuberosum HOM05D000156 ORTHO05D002715 3.9e-07 58.9 61 45.9
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 5.1e-07 58.5 68 47.1
Potri.006G046000 Populus trichocarpa HOM05D000156 ORTHO05D002715 8.7e-07 57.8 48 58.3
Sed0019433 Sechium edule HOM05D000156 ORTHO05D002715 8.7e-07 57.8 99 35.4
Ca_12265_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 1.1e-06 57.4 46 52.2
Ca_30549_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 1.1e-06 57.4 46 52.2
Phvul.007G249900 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 1.1e-06 57.4 48 52.1
Sabra06G0031600 Salix brachista HOM05D000156 ORTHO05D002715 1.1e-06 57.4 48 60.4
Cc06_g18300 Coffea canephora HOM05D000156 ORTHO05D002715 1.5e-06 57.0 54 46.3
MD14G1079600 Malus domestica HOM05D000156 ORTHO05D002715 1.5e-06 57.0 50 56.0
arahy.Tifrunner.gnm1.ann1.C7PAZI Arachis hypogaea HOM05D000156 ORTHO05D002715 1.9e-06 56.6 48 54.2
arahy.Tifrunner.gnm1.ann1.J6EHGP Arachis hypogaea HOM05D000156 ORTHO05D002715 1.9e-06 56.6 48 54.2
CSS0025309 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D002715 3.3e-06 55.8 52 53.8
Peaxi162Scf00130g00925 Petunia axillaris HOM05D000156 ORTHO05D002715 3.3e-06 55.8 55 47.3
SGA_v2.0_scaffold105G30362 Striga asiatica HOM05D000156 ORTHO05D002715 7.4e-06 54.7 49 51.0


User provided reference genes

Program Settings