Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 8.4e-96 353.6 168 100.0
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.9e-92 342.4 168 96.4
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.6e-91 339.3 168 94.6
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.4e-88 327.4 168 91.1
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 8.4e-88 327.0 168 90.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.1e-87 326.6 168 90.5
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.4e-87 325.5 168 89.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.4e-87 325.5 168 89.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 5.4e-87 324.3 168 89.3
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 5.4e-87 324.3 168 89.3
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 9.3e-87 323.6 168 90.5
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 3.5e-86 321.6 168 89.3
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.6e-78 296.2 169 82.8
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.6e-78 296.2 168 83.3
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.6e-78 296.2 168 83.3
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.6e-78 294.7 168 82.7
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.0e-77 293.5 168 80.4
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.3e-77 293.1 168 78.6
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 3.0e-77 292.0 169 83.4
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 3.9e-77 291.6 169 83.4
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.9e-76 289.3 168 79.2
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.3e-76 288.5 168 78.6
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 4.3e-76 288.1 168 78.0
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.6e-75 286.2 168 78.6
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 3.1e-74 282.0 168 76.2
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 5.3e-74 281.2 168 76.8
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 6.9e-74 280.8 168 76.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 1.2e-73 280.0 173 77.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.6e-73 278.9 168 76.2
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.6e-73 278.9 168 76.2
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 3.4e-73 278.5 168 75.0
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 4.5e-73 278.1 168 75.6
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.7e-72 276.2 168 75.0
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 64.9
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.9
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.9
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.9
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 7.9e-62 240.7 168 61.3
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.9e-62 240.7 168 61.3
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.3e-61 240.0 170 61.8
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.8e-61 239.6 168 61.3
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 62.5
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.9e-61 238.4 168 61.3
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 6.7e-61 237.7 167 61.7
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 8.7e-61 237.3 168 62.5
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 60.7
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 63.1
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 61.3
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 2.8e-59 232.3 168 59.5
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 2.8e-59 232.3 168 60.1
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 3.7e-59 231.9 168 62.5
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 3.7e-59 231.9 169 61.5
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 3.7e-59 231.9 167 59.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 3.7e-59 231.9 167 59.3
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 62.5
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 60.7
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 2.4e-58 229.2 168 58.9
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 9.0e-58 227.3 163 60.1
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.5e-57 226.5 172 58.1
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 59.5
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 60.7
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 59.5
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 60.1
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 60.7
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.3e-56 223.4 170 60.6
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 1.3e-56 223.4 168 58.9
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 58.3
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 57.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 60.1
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.1e-55 220.3 168 62.5
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.2e-55 218.8 170 54.7
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.2e-55 218.4 170 58.8
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 4.2e-55 218.4 168 57.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 9.4e-55 217.2 170 54.1
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 9.4e-55 217.2 168 57.7
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 9.4e-55 217.2 168 60.1
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.2e-54 216.9 165 57.0
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 56.0
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 60.7
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.1e-54 216.1 168 61.3
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 2.7e-54 215.7 170 54.7
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.7e-54 215.7 168 56.5
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 6.1e-54 214.5 168 59.5
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 7.9e-54 214.2 165 53.9
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.0e-53 213.8 168 60.1
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.7e-53 211.1 169 60.9
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.7e-53 211.1 169 60.9
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 8.8e-53 210.7 205 50.2
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 2.0e-52 209.5 170 57.6
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 3.3e-52 208.8 179 52.0
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 4.3e-52 208.4 184 55.4
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.3e-51 206.8 153 61.4
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 6.3e-51 204.5 168 53.6
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 6.3e-51 204.5 190 50.0
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.4e-50 203.4 172 54.1
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.4e-50 203.4 168 54.8
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.8e-50 203.0 201 47.3
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.4e-50 202.6 167 53.9
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.2e-49 200.3 168 53.0
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 51.8
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 2.2e-48 196.1 168 53.0
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 3.8e-48 195.3 166 50.6
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 6.5e-48 194.5 169 54.4
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 8.5e-48 194.1 168 51.2
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 8.5e-48 194.1 182 48.4
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.9e-47 193.0 153 54.2
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 3.2e-47 192.2 141 61.0
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 5.5e-47 191.4 168 51.2
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 9.4e-47 190.7 205 45.9
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 6.1e-46 188.0 237 42.2
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.0e-44 183.0 137 59.1
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.3e-43 180.3 168 52.4
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 1.4e-42 176.8 193 44.6
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.4e-42 176.0 125 58.4
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 9.1e-42 174.1 140 56.4
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 2.2e-40 169.5 190 44.2
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.5e-39 166.8 167 48.5
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 3.6e-38 162.2 169 46.7
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.0e-37 160.6 145 49.0
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.3e-37 159.5 173 45.1
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.0e-36 156.4 151 50.3
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 7.5e-36 154.5 168 45.8
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.1e-34 150.6 174 44.3
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 5.3e-34 148.3 111 56.8
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 5.3e-34 148.3 126 54.8
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 7.0e-34 147.9 186 41.4
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.3e-32 143.7 104 58.7
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 3.8e-32 142.1 169 42.0
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.9e-31 139.8 169 41.4
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 3.6e-30 135.6 168 40.5
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 3.1e-26 122.5 90 58.9
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.7e-24 116.7 97 58.8
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 5.5e-23 111.7 171 36.3
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.0e-21 107.5 169 34.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.4e-21 107.1 109 45.0
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 6.8e-21 104.8 162 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 9.8e-20 100.9 142 36.6
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.4e-18 97.1 184 31.5
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 7.0e-18 94.7 163 33.1
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.7e-16 90.1 171 30.4
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.8e-16 89.0 98 38.8
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-15 87.4 112 46.4
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.5e-15 87.0 52 69.2
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.2e-14 84.0 169 27.2
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 4.0e-13 79.0 67 55.2


User provided reference genes

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