Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 6.0e-255 883.6 435 100.0
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 6.7e-222 773.9 442 86.4
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 1.4e-219 766.1 440 86.4
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 1.8e-219 765.8 435 86.7
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 2.4e-219 765.4 436 87.8
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 1.7e-217 759.2 435 85.7
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 1.7e-217 759.2 435 85.7
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 1.7e-217 759.2 435 85.7
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.8e-217 758.1 435 85.5
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 9.4e-216 753.4 435 85.3
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 3.9e-214 748.0 435 85.1
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 2.4e-203 712.2 435 80.5
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 7.7e-202 707.2 435 79.8
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 7.7e-202 707.2 435 79.8
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 7.7e-202 707.2 435 79.8
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.3e-201 706.4 435 80.0
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 8.5e-201 703.7 432 80.1
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 1.4e-198 696.4 439 77.4
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.2e-159 567.0 438 63.9
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 4.0e-158 562.0 437 64.3
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 6.8e-158 561.2 442 62.7
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 2.0e-157 559.7 432 65.5
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.3e-156 557.0 431 63.8
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 8.4e-156 554.3 435 62.5
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.4e-155 552.7 435 64.6
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 7.1e-155 551.2 438 63.2
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 1.2e-154 550.4 441 63.0
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 3.5e-154 548.9 435 62.1
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 7.8e-154 547.7 437 62.2
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.5e-152 543.5 437 63.4
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 2.5e-152 542.7 431 62.9
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.3e-152 542.0 444 61.9
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 1.6e-151 540.0 460 61.7
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 3.6e-151 538.9 438 62.6
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.1e-150 537.3 436 61.2
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 1.8e-150 536.6 435 60.2
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 3.1e-150 535.8 429 61.3
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 3.1e-150 535.8 428 61.2
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 4.0e-150 535.4 439 61.3
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 6.9e-150 534.6 434 61.1
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 9.0e-150 534.3 429 61.1
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 1.2e-149 533.9 428 60.7
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 2.6e-149 532.7 360 69.7
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 2.6e-149 532.7 342 71.6
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 3.4e-149 532.3 362 68.5
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 9.9e-149 530.8 342 71.6
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 2.2e-148 529.6 431 61.7
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 2.2e-148 529.6 429 59.7
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 6.4e-148 528.1 431 61.3
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 8.4e-148 527.7 416 62.3
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 1.9e-147 526.6 351 69.8
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 3.2e-147 525.8 358 68.4
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 5.4e-147 525.0 431 60.8
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 9.3e-147 524.2 416 62.5
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.1e-146 523.1 415 61.9
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.7e-146 522.7 445 59.8
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 3.5e-146 522.3 450 58.0
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 3.5e-146 522.3 431 61.9
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 7.8e-146 521.2 420 61.4
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 1.0e-145 520.8 431 60.8
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 1.0e-145 520.8 431 60.8
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.0e-145 520.8 448 59.2
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.0e-145 520.8 428 61.9
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.3e-145 520.4 431 60.6
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.3e-145 520.4 358 67.9
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 3.9e-145 518.8 438 60.5
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 8.7e-145 517.7 429 58.7
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.5e-144 516.2 443 58.5
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 3.3e-144 515.8 448 58.7
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 5.6e-144 515.0 353 68.6
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 9.6e-144 514.2 349 67.6
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 3.6e-143 512.3 414 61.8
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 6.2e-143 511.5 430 59.8
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 6.2e-143 511.5 431 60.1
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 8.1e-143 511.1 432 60.0
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 8.1e-143 511.1 426 60.3
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.8e-142 510.0 350 67.7
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 3.1e-142 509.2 435 57.9
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 3.1e-142 509.2 350 67.4
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 6.9e-142 508.1 428 60.0
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 6.9e-142 508.1 422 60.4
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 2.0e-141 506.5 437 58.4
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 1.3e-140 503.8 431 60.3
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 2.9e-140 502.7 405 61.5
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 4.9e-140 501.9 421 58.7
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 4.9e-140 501.9 421 58.9
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 6.4e-140 501.5 457 57.1
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 1.1e-139 500.7 428 59.8
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.4e-139 499.6 432 58.1
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 4.2e-139 498.8 427 58.5
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.2e-138 497.3 432 57.9
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 3.5e-138 495.7 428 57.2
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.5e-138 495.7 427 58.5
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 6.0e-138 495.0 350 66.9
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.8e-137 493.4 432 56.2
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 3.0e-137 492.7 350 66.6
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 3.9e-137 492.3 429 56.9
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 5.1e-137 491.9 347 65.7
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 6.7e-137 491.5 428 57.7
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 8.7e-137 491.1 428 57.7
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 8.7e-137 491.1 347 66.0
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 3.3e-136 489.2 433 56.6
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 9.6e-136 487.6 358 62.8
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 2.1e-135 486.5 431 55.5
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 6.2e-135 485.0 432 57.2
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 6.2e-135 485.0 427 57.8
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.1e-134 484.2 430 57.4
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 1.8e-134 483.4 347 65.1
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 2.4e-134 483.0 430 58.6
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 4.0e-134 482.3 347 65.4
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 4.0e-134 482.3 333 67.3
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 5.3e-134 481.9 429 57.3
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 1.5e-133 480.3 426 56.3
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 2.2e-132 476.5 428 57.0
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 2.9e-132 476.1 424 57.1
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 9.3e-131 471.1 423 56.3
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 7.9e-130 468.0 431 55.5
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 3.0e-129 466.1 342 62.0
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 5.7e-128 461.8 326 68.7
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 7.4e-128 461.5 426 56.1
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 7.4e-128 461.5 424 56.1
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 2.1e-127 459.9 420 56.9
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.8e-127 459.5 439 55.8
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-126 456.4 419 56.1
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 9.0e-126 454.5 426 54.7
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 4.5e-125 452.2 415 56.1
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 2.2e-124 449.9 420 55.0
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.9e-124 449.5 426 51.9
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 2.9e-124 449.5 424 54.0
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 3.8e-124 449.1 244 86.1
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 1.9e-123 446.8 419 54.9
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.5e-123 446.4 348 59.8
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 1.2e-122 444.1 346 62.1
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 6.1e-122 441.8 435 51.3
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 1.8e-121 440.3 422 53.3
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 5.1e-121 438.7 422 54.0
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 2.2e-119 433.3 292 68.8
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.0e-112 410.2 341 57.2
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.4e-110 404.1 341 56.6
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 4.1e-110 402.5 382 52.4
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 7.7e-109 398.3 251 71.7
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 2.3e-105 386.7 340 55.3
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 1.5e-104 384.0 340 53.8
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.5e-104 384.0 342 54.1
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 5.7e-104 382.1 340 54.4
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 9.7e-104 381.3 433 49.7
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-103 380.9 444 45.9
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.7e-98 363.2 305 56.1
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 2.7e-98 363.2 250 65.2
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.8e-97 360.5 342 51.5
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 4.5e-93 345.9 240 65.4
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 9.4e-91 338.2 351 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 4.0e-89 332.8 340 48.2
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 6.8e-89 332.0 344 47.7
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 6.8e-89 332.0 338 48.2
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 5.7e-88 328.9 297 60.6
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 1.1e-86 324.7 236 61.4
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.9e-84 316.6 348 46.6
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.9e-83 313.9 386 44.8
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 1.5e-80 304.3 236 57.2
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 1.2e-77 294.7 322 46.6
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.0e-76 289.3 340 44.1
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 7.2e-75 285.4 345 43.5
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 8.0e-74 282.0 348 42.0
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.8e-73 280.8 346 40.8
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 1.8e-73 280.8 241 53.5
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.1e-70 271.6 345 42.0
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.1e-70 271.6 345 40.9
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.6e-64 250.4 344 37.2
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 7.8e-61 238.8 373 37.0
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 7.6e-40 169.1 152 57.9
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 1.6e-34 151.4 154 50.6
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 8.4e-31 139.0 417 26.1
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 9.3e-22 109.0 85 56.5
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.2e-21 108.6 114 43.0
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.8e-20 104.8 121 43.8
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 1.5e-16 91.7 77 49.4
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 3.4e-16 90.5 140 45.0
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.2e-15 87.8 100 40.0
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 5.1e-12 76.6 87 46.0
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.7e-07 61.6 67 34.3
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 5.5e-06 56.6 36 66.7


User provided reference genes

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