Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 5.5e-196 687.6 378 100.0
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 4.0e-122 442.2 299 77.6
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 1.9e-100 370.2 312 71.2
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 2.9e-80 303.1 244 68.4
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 3.5e-73 279.6 316 63.0
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 4.0e-69 266.2 277 56.7
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.6e-68 263.5 308 58.4
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.0e-61 241.5 304 55.9
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 1.0e-56 224.9 315 47.3
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.3e-56 224.6 315 47.9
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 5.0e-56 222.6 310 47.7
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 4.2e-55 219.5 315 47.0
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.8e-54 216.9 308 51.6
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 3.4e-52 209.9 306 46.4
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 1.1e-50 204.9 302 47.7
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.1e-50 204.9 313 48.6
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 1.2e-49 201.4 301 46.5
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 1.2e-49 201.4 301 46.5
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 4.5e-49 199.5 303 46.9
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.3e-48 198.0 309 48.9
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 1.7e-48 197.6 302 47.0
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 2.5e-47 193.7 300 47.0
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.6e-46 191.0 300 46.3
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 4.0e-45 186.4 306 45.4
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 2.0e-44 184.1 301 46.2
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 3.7e-43 179.9 302 45.0
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.1e-42 176.4 308 48.4
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 1.2e-36 158.3 210 47.6
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 2.9e-35 153.7 302 38.4
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 5.4e-34 149.4 306 46.1
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 9.2e-34 148.7 306 44.4
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 5.2e-29 132.9 216 43.1
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.9e-27 127.1 286 36.0
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 9.2e-26 122.1 219 39.7
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.7e-24 117.9 172 45.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.4e-20 103.2 222 36.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 4.1e-18 96.7 331 33.2
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 9.2e-18 95.5 213 37.6
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-17 95.1 218 36.7
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.6e-17 93.2 220 36.4
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-16 91.7 219 35.6
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 5.1e-16 89.7 239 33.1
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.5e-15 87.4 249 29.3
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.3e-15 87.0 250 34.0
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.3e-15 87.0 236 33.9
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.3e-15 86.7 236 33.5
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 9.6e-15 85.5 314 33.8
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.8e-14 84.0 236 33.1
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 3.6e-14 83.6 242 29.3
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 1.8e-13 81.3 131 46.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.4e-13 80.9 238 30.3
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.4e-13 80.9 238 29.8
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 2.4e-13 80.9 239 28.0
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.4e-13 80.9 318 34.9
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 9.0e-13 79.0 237 27.8
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.2e-12 78.6 231 31.2
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.0e-12 77.8 242 31.4
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 5.8e-12 76.3 112 49.1
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 5.8e-12 76.3 308 33.4
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 7.6e-12 75.9 318 35.2
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 9.9e-12 75.5 331 25.7
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 9.9e-12 75.5 244 30.3
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.3e-11 75.1 233 29.2
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 3.8e-11 73.6 316 33.2
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.9e-11 73.2 226 29.6
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 4.9e-11 73.2 223 30.9
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.9e-11 73.2 239 31.4
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 4.9e-11 73.2 227 28.6
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 4.9e-11 73.2 259 28.6
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.1e-10 72.0 226 29.2
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 1.1e-10 72.0 319 32.9
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.1e-10 72.0 231 28.6
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.9e-10 71.2 252 31.0
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 2.4e-10 70.9 241 30.7
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 3.2e-10 70.5 232 29.3
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.2e-09 68.6 228 26.3
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.6e-09 68.2 231 29.4
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.1e-09 67.8 263 27.8
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.7e-09 67.4 242 30.2
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 3.5e-09 67.0 261 28.7
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 4.6e-09 66.6 226 29.6
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 6.0e-09 66.2 315 32.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.3e-08 65.1 245 29.0
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.3e-08 65.1 243 26.3
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.3e-08 65.1 240 27.5
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 3.9e-08 63.5 158 34.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 3.9e-08 63.5 228 28.5
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.7e-08 62.4 94 35.1
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.1e-07 62.0 221 28.5
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.5e-07 61.6 207 31.4
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.5e-07 60.8 316 33.2
CARHR020590 Cardamine hirsuta HOM05D008819 ORTHO05D003197 5.6e-07 59.7 60 61.7
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.3e-07 59.3 277 26.7
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 7.3e-07 59.3 98 37.8
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 9.6e-07 58.9 80 35.0
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 9.6e-07 58.9 268 26.1
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.6e-07 58.9 348 32.2
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 1.6e-06 58.2 252 30.2
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.1e-06 57.8 336 30.1
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 2.8e-06 57.4 271 29.9
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 2.8e-06 57.4 265 27.5
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 4.8e-06 56.6 101 40.6
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 8.1e-06 55.8 241 29.5


User provided reference genes

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