Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 0.0e+00 1164.1 618 100.0
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 0.0e+00 1112.8 619 94.3
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.8e-308 1062.0 630 89.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.2e-294 1013.4 634 85.0
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.0e-292 1008.1 627 85.2
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 3.9e-292 1007.7 626 87.1
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.7e-269 931.8 626 80.4
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 6.7e-268 927.2 626 80.0
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 3.8e-263 911.4 620 78.1
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 6.5e-263 910.6 620 78.7
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 2.5e-262 908.7 620 78.5
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 7.0e-249 864.0 629 75.2
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.7e-239 832.8 669 69.5
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 8.9e-236 820.5 633 70.6
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.3e-234 816.6 634 69.9
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 3.2e-233 812.0 634 70.0
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 9.2e-233 810.4 634 70.2
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.3e-231 806.6 630 70.6
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 3.3e-222 775.4 632 67.1
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.6e-221 773.1 632 66.8
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 3.1e-220 768.8 607 69.5
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.3e-218 763.5 635 67.4
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 6.4e-218 761.1 670 64.5
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 9.2e-217 757.3 625 66.4
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.7e-216 755.7 631 66.7
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 6.0e-216 754.6 552 72.8
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 7.9e-200 701.0 658 58.2
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 8.7e-199 697.6 658 57.8
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 7.4e-198 694.5 610 61.3
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 3.2e-193 679.1 660 58.2
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 9.3e-193 677.6 629 58.3
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.2e-192 677.2 655 57.7
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 6.0e-192 674.9 665 58.3
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 6.7e-191 671.4 659 56.1
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.9e-190 669.8 663 56.6
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.3e-190 669.1 708 55.1
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.6e-189 666.8 615 58.5
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.1e-188 664.1 635 58.1
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.4e-188 663.7 636 56.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 4.0e-188 662.1 591 61.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 4.0e-188 662.1 635 58.0
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 6.9e-188 661.4 605 60.5
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 9.0e-188 661.0 590 60.7
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.5e-187 660.2 635 58.0
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.0e-187 659.8 590 61.2
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.6e-187 659.4 708 54.5
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 2.6e-187 659.4 661 56.9
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 5.8e-187 658.3 661 56.9
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 6.5e-186 654.8 660 55.8
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 8.4e-186 654.4 661 55.8
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 4.2e-185 652.1 656 56.2
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 9.3e-185 651.0 687 55.0
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 2.7e-184 649.4 612 58.5
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 6.0e-184 648.3 594 59.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.8e-183 646.7 558 62.4
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 3.9e-183 645.6 677 53.3
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 8.7e-183 644.4 672 56.0
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 8.7e-183 644.4 667 55.5
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.5e-182 643.7 670 54.5
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.9e-182 643.3 663 55.5
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 9.7e-182 641.0 605 58.5
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.6e-181 640.2 601 57.4
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 6.3e-181 638.3 675 55.9
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.8e-180 636.7 662 54.2
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 5.3e-180 635.2 664 54.4
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 9.0e-180 634.4 607 58.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 9.0e-180 634.4 585 57.8
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 7.6e-179 631.3 562 60.9
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 7.6e-179 631.3 554 60.6
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.0e-178 630.9 654 54.7
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.3e-178 630.6 604 56.8
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.7e-178 630.2 565 58.9
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.9e-177 626.7 669 52.8
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.9e-177 626.7 669 52.8
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.5e-177 626.3 658 53.3
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 3.6e-176 622.5 666 55.0
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 6.1e-176 621.7 649 53.5
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.3e-175 619.8 638 53.8
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 5.1e-175 618.6 659 53.0
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 3.4e-171 605.9 666 52.4
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 5.9e-171 605.1 666 52.7
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 5.9e-171 605.1 680 52.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 5.9e-171 605.1 671 53.2
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 7.7e-171 604.7 588 56.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.6e-168 597.0 645 52.6
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 7.9e-168 594.7 600 55.2
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.4e-167 594.0 583 56.4
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.0e-166 590.1 591 56.0
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 4.4e-166 589.0 642 52.0
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.7e-165 587.0 648 52.8
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 4.8e-165 585.5 651 52.8
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 2.6e-163 579.7 666 52.7
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.3e-162 577.4 670 50.1
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 6.5e-162 575.1 548 57.1
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 7.2e-161 571.6 646 52.6
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.8e-156 557.0 579 52.2
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.6e-155 553.1 594 52.2
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.5e-155 552.4 498 59.8
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 4.5e-155 552.4 579 51.8
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 5.5e-153 545.4 529 53.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 9.4e-153 544.7 676 48.4
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 8.0e-152 541.6 662 47.9
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 6.7e-151 538.5 531 54.2
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.5e-150 537.3 596 51.0
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 2.6e-150 536.6 604 50.7
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.7e-149 533.9 616 51.8
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.7e-149 532.7 602 49.7
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 7.0e-148 528.5 666 46.1
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 5.0e-146 522.3 559 50.1
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.1e-145 521.2 604 48.5
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.2e-143 512.3 607 47.9
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 8.3e-141 505.0 676 45.3
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.3e-138 497.7 673 45.3
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 8.6e-138 495.0 527 52.0
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 5.5e-137 492.3 565 49.6
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.5e-134 481.9 450 59.8
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 2.8e-133 479.9 630 45.4
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 2.7e-131 473.4 612 45.9
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 7.3e-121 438.7 360 66.9
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.6e-118 430.3 650 42.9
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 7.8e-115 418.7 316 70.3
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.1e-111 408.3 615 40.7
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 7.5e-110 402.1 217 90.8
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-105 388.3 243 80.7
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.1e-105 388.3 633 38.4
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 4.3e-97 359.8 632 40.7
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 4.3e-89 333.2 440 41.1
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 9.9e-86 322.0 496 37.5
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.2e-84 317.0 556 35.6
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 7.9e-83 312.4 585 34.2
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 9.0e-79 298.9 421 39.4
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 8.7e-74 282.3 320 49.7
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 4.6e-59 233.4 130 89.2
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.8e-42 178.3 251 43.0
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 2.9e-21 107.8 544 22.6
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-13 82.8 67 65.7
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.9e-08 64.7 51 62.7
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 3.2e-07 61.2 220 28.2
A07p40740 Brassica napus HOM05D005308 ORTHO05D006494 4.1e-07 60.8 41 78.0


User provided reference genes

Program Settings