Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 0.0e+00 1282.3 742 100.0
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 0.0e+00 1182.2 742 93.0
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 0.0e+00 1105.5 742 88.1
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 0.0e+00 1085.9 749 86.2
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 1.6e-308 1062.4 743 86.0
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 3.3e-301 1038.1 747 84.5
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 3.1e-291 1005.0 748 83.2
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 8.9e-291 1003.4 753 82.6
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 2.4e-288 995.3 748 82.6
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 3.9e-286 988.0 773 80.3
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 2.5e-277 958.7 768 77.6
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 3.4e-274 948.3 691 84.1
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.5e-250 869.8 597 89.6
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 7.0e-211 738.0 759 63.0
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 4.2e-208 728.8 766 65.5
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 6.9e-134 482.3 708 52.1
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 5.5e-131 472.6 780 47.9
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 4.6e-130 469.5 775 48.4
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 2.3e-129 467.2 782 47.8
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 8.7e-129 465.3 782 48.6
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.1e-128 464.9 786 47.7
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.3e-128 463.0 778 47.9
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 9.6e-128 461.8 721 48.5
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.3e-127 461.5 705 51.5
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 4.8e-127 459.5 709 50.4
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 8.2e-127 458.8 474 57.8
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 4.5e-125 453.0 722 48.6
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 5.8e-125 452.6 431 62.9
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 2.9e-124 450.3 790 46.8
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 2.9e-124 450.3 697 49.5
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 4.9e-124 449.5 790 46.8
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 4.9e-124 449.5 783 47.1
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 4.6e-122 443.0 862 36.8
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 1.0e-121 441.8 691 49.6
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 2.3e-121 440.7 714 49.0
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 7.4e-120 435.6 635 53.4
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 3.1e-118 430.3 779 47.8
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 3.4e-117 426.8 772 45.2
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 1.0e-113 415.2 690 47.7
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 2.3e-113 414.1 885 41.9
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 2.3e-113 414.1 665 50.4
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 1.5e-112 411.4 718 47.9
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 2.5e-112 410.6 699 46.8
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.3e-112 410.2 843 43.1
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 3.3e-112 410.2 776 44.2
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 5.7e-112 409.5 769 43.6
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 2.2e-111 407.5 683 47.9
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 2.8e-111 407.1 634 47.2
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 3.7e-111 406.8 684 47.2
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 1.2e-109 401.7 701 46.5
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 3.4e-109 400.2 711 47.5
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 1.0e-108 398.7 702 46.9
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 2.9e-108 397.1 787 44.3
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 5.5e-107 392.9 616 52.8
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 7.2e-107 392.5 771 44.7
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 2.7e-106 390.6 694 46.1
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 3.6e-106 390.2 838 41.9
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 4.7e-106 389.8 702 47.0
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 3.0e-105 387.1 702 46.9
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 3.0e-105 387.1 714 45.4
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 8.8e-105 385.6 636 50.6
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 3.3e-104 383.6 696 46.7
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 5.7e-104 382.9 770 43.9
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 2.8e-103 380.6 693 45.0
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 4.8e-103 379.8 782 44.0
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 7.0e-102 375.9 711 45.0
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 2.6e-101 374.0 786 41.9
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 2.9e-100 370.5 691 45.2
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.5e-99 368.2 736 44.7
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 4.7e-98 363.2 638 49.8
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 2.0e-96 357.8 690 44.8
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.3e-95 355.1 643 45.6
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 7.7e-93 345.9 640 39.4
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 8.5e-92 342.4 822 40.4
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 1.0e-89 335.5 698 42.4
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 7.5e-88 329.3 618 36.1
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.8e-87 327.4 628 46.2
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 8.3e-87 325.9 710 41.1
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 2.7e-85 320.9 645 44.8
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 4.5e-85 320.1 687 44.0
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 1.5e-83 315.1 451 45.2
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 6.1e-82 309.7 480 41.2
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 9.8e-80 302.4 539 50.8
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 1.8e-73 281.6 564 46.8
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 2.9e-71 274.2 631 42.0
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 3.7e-71 273.9 683 39.5
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 1.4e-70 271.9 583 34.3
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 2.0e-69 268.1 678 40.0
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 1.5e-67 261.9 561 44.6
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 4.3e-67 260.4 579 44.6
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 6.0e-61 240.0 531 43.3
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 2.3e-57 228.0 234 51.3
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 5.8e-40 170.2 197 48.2
Aa31LG4G5420 Aethionema arabicum HOM05D000736 ORTHO05D002593 4.9e-39 167.2 149 61.1
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 4.2e-38 164.1 170 53.5
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 3.9e-36 157.5 438 45.4
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 3.9e-36 157.5 657 26.9
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 4.4e-32 144.1 438 43.8
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 9.9e-32 142.9 327 34.9
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 2.6e-24 118.2 412 45.6
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.9e-23 114.8 213 37.1
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 1.1e-14 86.3 70 60.0
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 3.2e-14 84.7 53 75.5
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 9.3e-14 83.2 47 76.6
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 7.9e-13 80.1 81 49.4
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 1.3e-10 72.8 225 32.4
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.7e-10 71.2 274 29.6
C02p32190 Brassica napus HOM05D006757 ORTHO05D004651 8.2e-10 70.1 34 82.4
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 2.6e-08 65.1 163 30.7
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 3.8e-07 61.2 66 47.0
A02p19650 Brassica napus HOM05D006757 ORTHO05D004651 5.0e-07 60.8 32 90.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 7.2e-06 57.0 220 22.3
MCO07G335 Micromonas commoda HOM05D001616 ORTHO05D004707 7.2e-06 57.0 217 23.5


User provided reference genes

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