Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 0.0e+00 1313.1 666 100.0
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 0.0e+00 1250.7 660 96.5
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 0.0e+00 1241.5 666 94.7
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 0.0e+00 1218.0 660 92.7
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 0.0e+00 1205.7 667 91.0
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 0.0e+00 1204.5 658 91.9
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1187.2 658 90.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1187.2 660 90.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1187.2 660 90.6
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1178.7 671 89.1
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 0.0e+00 1138.6 666 86.3
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1129.0 658 86.3
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1120.5 648 86.9
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1116.3 664 85.2
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 0.0e+00 1115.1 658 85.6
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1110.9 658 85.1
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 4.6e-312 1073.5 662 81.6
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 4.9e-264 914.4 648 70.5
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.6e-262 909.4 648 69.1
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.0e-262 909.1 661 69.0
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 4.6e-262 907.9 648 69.3
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 6.6e-261 904.0 648 69.1
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 6.6e-261 904.0 648 68.1
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.1e-260 903.3 660 67.9
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.1e-260 903.3 648 68.1
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 1.5e-260 902.9 649 68.6
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.1e-258 896.7 643 70.0
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 2.9e-256 888.6 647 68.2
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 2.9e-256 888.6 660 67.0
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 8.3e-256 887.1 660 65.8
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 4.1e-255 884.8 657 66.4
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 7.1e-255 884.0 660 67.3
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 7.1e-255 884.0 657 66.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.7e-253 879.4 663 66.1
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 4.3e-252 874.8 646 65.6
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.1e-251 872.5 647 67.9
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 1.5e-249 866.3 654 67.0
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 2.0e-249 865.9 642 67.8
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 4.4e-249 864.8 658 65.8
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 4.4e-249 864.8 649 66.1
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.7e-248 862.8 647 67.1
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.2e-248 862.4 648 66.4
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 3.8e-248 861.7 642 66.2
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 8.4e-248 860.5 643 67.0
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 1.1e-247 860.1 647 66.5
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 3.2e-247 858.6 642 66.0
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 9.2e-247 857.1 643 66.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.2e-246 856.7 642 66.8
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 7.8e-246 854.0 648 65.1
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 1.3e-245 853.2 644 66.1
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 3.0e-245 852.0 644 66.1
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 3.3e-244 848.6 662 65.9
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 7.3e-244 847.4 641 64.7
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 9.6e-244 847.0 651 66.4
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.8e-243 845.5 642 65.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 1.5e-241 839.7 641 64.9
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 2.0e-241 839.3 648 65.3
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 2.6e-241 839.0 619 67.0
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.9e-241 837.0 641 64.9
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 9.9e-241 837.0 651 64.5
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.3e-240 836.6 575 69.7
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.9e-239 832.8 641 64.7
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 7.8e-238 827.4 644 64.0
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.7e-237 826.2 649 64.1
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 8.7e-237 823.9 655 62.6
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 3.3e-236 822.0 654 64.2
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.6e-235 819.7 648 64.5
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.8e-235 818.9 643 64.9
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 3.1e-234 815.5 641 64.3
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 3.1e-234 815.5 671 62.4
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.3e-232 810.1 657 61.9
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 4.9e-232 808.1 662 61.8
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.4e-231 806.6 657 62.1
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 7.1e-231 804.3 642 64.0
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.1e-230 802.7 655 61.7
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 2.1e-230 802.7 645 64.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.6e-228 794.7 642 62.0
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.6e-228 794.7 642 61.7
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 3.4e-225 785.4 613 63.6
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.9e-221 771.9 652 61.0
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.5e-220 769.2 657 61.0
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 6.9e-218 761.1 654 61.8
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.2e-215 752.3 650 59.4
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 5.5e-215 751.5 679 59.5
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 4.6e-214 748.4 651 59.6
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 5.7e-212 741.5 651 59.0
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 2.4e-210 736.1 653 59.3
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 7.2e-207 724.5 650 59.5
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 9.4e-199 697.6 556 62.9
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.5e-196 690.3 525 65.5
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 5.0e-192 675.2 643 55.7
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.8e-186 656.8 626 56.5
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.2e-185 654.1 683 53.3
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.5e-185 652.5 554 59.9
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 4.8e-179 632.1 649 55.3
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 2.7e-177 626.3 623 53.6
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 5.6e-159 565.5 445 62.2
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.6e-158 563.9 664 47.4
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 3.5e-153 546.2 645 46.4
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.3e-152 544.3 497 55.9
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.1e-151 541.2 575 52.2
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.1e-150 537.0 651 45.5
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.9e-146 523.9 645 44.3
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 6.0e-145 518.8 649 47.1
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 6.4e-115 419.1 625 39.0
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 5.0e-83 313.2 336 52.1
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 8.8e-72 275.8 221 58.4
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 1.9e-50 204.9 280 46.4
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.1e-45 189.1 157 56.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 3.5e-44 184.1 122 74.6
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 4.3e-42 177.2 278 39.2
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.5e-39 168.7 107 78.5
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 9.8e-39 166.0 141 61.7
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.3e-38 165.6 107 77.6
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.1e-37 162.5 156 50.0
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 4.6e-36 157.1 110 74.5
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 6.0e-36 156.8 141 55.3
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.0e-35 156.0 229 39.7
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.9e-35 154.1 156 50.6
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.1e-32 146.0 166 48.8
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 8.9e-32 142.9 97 74.2
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 2.0e-31 141.7 160 46.9
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 4.9e-30 137.1 86 77.9
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.6e-28 132.1 87 71.3
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.6e-25 122.1 81 77.8
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.1e-24 117.9 79 72.2
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 6.8e-24 116.7 80 75.0
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 4.9e-22 110.5 101 52.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 8.1e-17 93.2 88 58.0
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-14 85.9 56 69.6
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 4.2e-13 80.9 54 75.9
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 9.2e-13 79.7 89 48.3
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 1.0e-11 76.3 48 72.9
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 5.1e-11 73.9 518 21.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 2.6e-07 61.6 233 24.9


User provided reference genes

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