Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 4.9e-115 417.9 226 100.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.6e-102 376.3 225 92.0
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 7.3e-87 324.3 226 81.9
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.7e-81 305.8 224 75.4
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.0e-80 302.4 226 80.1
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 2.5e-79 299.3 224 71.9
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.8e-78 295.8 225 77.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 7.9e-73 277.7 224 72.8
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 3.0e-72 275.8 224 71.9
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 3.9e-72 275.4 226 68.6
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 3.9e-72 275.4 226 68.6
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 3.9e-72 275.4 226 68.6
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 3.9e-72 275.4 229 74.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.8e-69 266.5 215 72.6
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 5.3e-69 265.0 226 72.1
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 5.3e-69 265.0 226 72.1
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 9.9e-68 260.8 226 66.4
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.8e-67 258.8 225 65.3
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.4e-66 256.9 225 64.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 4.2e-66 255.4 225 68.0
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 5.5e-66 255.0 225 68.4
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.1e-65 253.1 227 67.0
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 5.7e-55 218.4 186 69.4
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.1e-47 194.1 218 54.6
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.9e-47 193.4 229 53.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.5e-44 183.7 180 61.1
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.9e-34 150.2 225 47.1
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.1e-33 146.7 220 45.0
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 6.1e-33 145.2 227 46.7
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.1e-31 141.0 218 44.5
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.6e-31 139.8 224 43.3
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.7e-30 137.1 218 44.5
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.5e-28 129.0 216 46.3
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.5e-26 123.2 193 45.6
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.5e-26 123.2 188 46.8
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.2e-26 122.5 185 45.4
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.6e-25 120.6 237 47.7
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 3.6e-25 119.4 218 39.9
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.4e-24 117.5 220 41.8
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.4e-24 117.5 227 44.9
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.3e-24 116.7 186 45.7
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.6e-23 113.2 221 38.9
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.3e-23 112.8 222 42.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 4.4e-23 112.5 172 45.9
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 5.7e-23 112.1 207 42.0
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 9.7e-23 111.3 229 39.3
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.3e-22 110.9 245 44.5
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-22 110.9 157 48.4
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.3e-22 110.9 219 42.0
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.7e-22 110.5 175 42.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.2e-22 110.2 177 41.2
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 2.8e-22 109.8 172 42.4
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.7e-22 109.4 174 42.5
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 6.3e-22 108.6 220 44.5
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.1e-21 107.8 173 45.7
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.1e-21 107.8 161 44.1
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.1e-21 107.8 211 41.7
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-21 107.5 207 38.6
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.8e-21 107.1 177 44.6
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.1e-21 105.9 164 45.1
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.1e-21 105.9 176 41.5
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.3e-21 105.5 181 43.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 5.3e-21 105.5 172 41.3
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 5.3e-21 105.5 176 40.9
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 7.0e-21 105.1 165 43.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.1e-21 104.8 167 40.1
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 9.1e-21 104.8 182 42.3
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.2e-20 104.4 179 40.8
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 3.5e-20 102.8 182 42.9
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 7.7e-20 101.7 163 41.1
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 7.7e-20 101.7 215 38.1
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.0e-19 101.3 160 39.4
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-19 100.9 161 41.6
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 2.2e-19 100.1 168 42.9
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.9e-19 99.8 180 41.7
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 2.9e-19 99.8 208 37.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 3.8e-19 99.4 216 37.5
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 5.0e-19 99.0 176 40.3
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 5.0e-19 99.0 173 42.2
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 6.5e-19 98.6 156 41.7
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.5e-19 98.6 163 42.3
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 6.5e-19 98.6 174 41.4
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 8.5e-19 98.2 158 41.8
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 8.5e-19 98.2 173 41.0
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 2.5e-18 96.7 182 41.2
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 3.2e-18 96.3 178 42.7
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 4.2e-18 95.9 159 40.3
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 4.2e-18 95.9 166 41.0
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 5.5e-18 95.5 155 42.6
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.5e-18 95.5 181 39.8
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 5.5e-18 95.5 181 39.8
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 7.2e-18 95.1 182 40.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.2e-17 94.4 169 40.8
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.6e-17 94.0 168 42.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.6e-17 94.0 213 35.7
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 3.6e-17 92.8 167 40.7
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 4.7e-17 92.4 179 38.5
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 6.1e-17 92.0 175 41.1
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.0e-16 91.3 166 39.8
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.4e-16 90.9 177 40.7
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 3.0e-16 89.7 165 39.4
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 8.8e-16 88.2 183 41.0
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 8.8e-16 88.2 160 40.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 8.8e-16 88.2 176 38.1
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.2e-15 87.8 162 39.5
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.2e-15 87.8 160 40.6
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.2e-15 87.8 168 42.3
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.5e-15 85.1 214 35.5
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 9.8e-15 84.7 152 37.5
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.3e-14 84.3 231 40.7
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.2e-14 83.6 214 36.0
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 2.8e-14 83.2 169 37.3
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 3.7e-14 82.8 212 34.0
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 4.8e-14 82.4 160 38.1
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 6.3e-14 82.0 189 37.6
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 6.3e-14 82.0 165 35.2
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-13 81.3 214 35.0
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-13 80.9 166 36.7
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 7.0e-13 78.6 174 35.6
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 3.5e-12 76.3 192 36.5
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 3.5e-12 76.3 175 37.7
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 3.5e-12 76.3 182 37.9
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.5e-12 75.9 158 36.7
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 2.9e-11 73.2 108 44.4
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 8.5e-11 71.6 140 38.6
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.1e-10 71.2 134 40.3
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.5e-10 70.1 134 40.3
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.2e-10 69.7 185 36.8
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 5.5e-10 68.9 109 42.2
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.2e-09 67.8 171 33.3
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.6e-09 67.4 171 31.6
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.1e-09 67.0 150 36.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.0e-08 64.7 92 45.7
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.2e-07 61.2 162 30.2
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 9.8e-07 58.2 175 36.6
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.9e-06 55.8 93 38.7


User provided reference genes

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