Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 8.3e-299 1029.6 532 100.0
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 9.2e-282 973.0 532 94.4
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 7.3e-271 936.8 532 91.9
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 1.4e-269 932.6 532 89.8
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 2.4e-269 931.8 532 90.0
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.8e-256 889.0 532 86.1
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.1e-247 859.8 532 83.1
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 4.6e-233 811.2 534 80.7
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 8.8e-232 807.0 534 80.1
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 6.3e-230 800.8 534 80.1
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 1.2e-225 786.6 532 78.2
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.7e-219 766.1 534 77.5
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 9.4e-218 760.4 540 73.5
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 2.2e-198 696.0 537 67.2
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 4.8e-198 694.9 534 66.7
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 3.1e-197 692.2 531 65.9
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.6e-196 689.9 535 66.7
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.7e-196 689.1 539 65.9
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.9e-196 688.0 529 66.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.3e-195 686.8 531 66.3
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.7e-195 686.4 529 66.4
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.7e-195 686.4 538 66.0
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 2.3e-195 686.0 535 65.6
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 3.8e-195 685.3 537 67.0
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 4.2e-194 681.8 536 66.2
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 7.2e-194 681.0 535 65.8
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 9.5e-194 680.6 528 65.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.2e-193 680.2 535 65.8
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 4.7e-193 678.3 530 66.4
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.3e-192 676.0 535 64.5
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 3.0e-192 675.6 533 65.3
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 4.0e-192 675.2 540 64.6
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.0e-191 672.9 540 63.3
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 4.4e-191 671.8 523 65.2
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 4.4e-191 671.8 535 64.3
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 5.7e-191 671.4 541 63.4
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 4.9e-190 668.3 531 64.6
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.3e-190 667.9 529 63.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 6.3e-190 667.9 533 64.9
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 8.3e-190 667.5 521 65.5
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.8e-189 666.4 531 64.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 9.2e-189 664.1 529 64.1
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.9e-188 661.4 524 64.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.7e-187 659.8 532 63.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.3e-187 659.4 561 62.7
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 8.6e-187 657.5 527 63.9
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.2e-185 653.7 532 60.5
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.2e-185 653.7 558 60.8
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 2.8e-185 652.5 524 64.1
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.8e-184 649.8 524 65.6
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.3e-184 649.4 543 62.4
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 3.1e-184 649.0 532 60.7
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.6e-183 646.0 532 63.0
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 5.8e-183 644.8 533 61.5
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 5.8e-183 644.8 523 64.1
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.3e-182 643.7 524 63.0
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.7e-182 643.3 530 62.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 3.7e-182 642.1 530 62.5
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.4e-181 640.2 532 62.4
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 2.3e-179 632.9 534 61.4
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 3.9e-179 632.1 547 61.6
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 8.6e-179 630.9 539 60.7
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.5e-178 630.2 575 59.0
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 9.5e-178 627.5 529 62.2
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 2.8e-177 625.9 535 59.6
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 4.7e-177 625.2 531 62.1
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 8.1e-177 624.4 585 56.6
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 6.8e-176 621.3 537 60.0
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 5.8e-175 618.2 532 60.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.3e-174 617.1 521 60.3
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.3e-171 607.1 538 58.6
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.7e-171 606.7 529 59.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 6.6e-171 604.7 533 60.8
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.6e-169 600.1 557 57.8
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 2.2e-166 589.7 543 58.6
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 3.7e-166 589.0 531 57.6
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-165 587.4 496 62.5
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.2e-165 585.9 450 66.4
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.1e-164 583.2 588 54.9
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.3e-163 579.7 448 67.0
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 5.6e-162 575.1 545 57.4
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.6e-159 566.2 530 54.9
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 7.6e-159 564.7 538 56.9
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.9e-158 562.0 499 58.1
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.3e-154 549.3 525 54.9
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 8.4e-150 534.6 525 53.7
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.7e-147 526.9 532 54.1
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 3.3e-146 522.7 437 60.9
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.2e-141 506.1 531 52.7
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 5.7e-130 468.8 405 60.5
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 4.8e-129 465.7 572 49.3
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.7e-126 457.2 397 59.4
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.1e-125 454.5 401 60.1
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 8.7e-123 444.9 546 46.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 5.7e-122 442.2 544 45.0
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.3e-121 441.0 530 46.0
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.4e-104 383.6 355 56.3
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 9.1e-104 381.7 355 56.1
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.2e-102 377.1 502 44.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.9e-101 374.0 560 39.5
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 9.7e-98 361.7 288 64.9
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.2e-95 354.8 548 39.1
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 8.8e-91 338.6 287 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.8e-88 330.9 467 41.3
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 8.6e-78 295.4 291 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.7e-70 271.2 386 41.7
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.9e-69 267.7 559 32.6
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.5e-69 267.3 204 67.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 4.4e-66 256.5 573 32.6
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.0e-54 218.8 546 30.4
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.0e-54 218.8 212 55.7
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 8.9e-51 205.7 151 68.9
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.9e-49 200.7 156 66.0
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.2e-42 178.7 169 51.5
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 5.8e-42 176.4 135 65.2
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.9e-41 174.1 130 65.4
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 7.8e-39 166.0 108 81.5
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.3e-38 165.2 135 65.9
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 6.2e-36 156.4 123 60.2
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.9e-29 134.8 113 60.2
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 4.0e-27 127.1 99 65.7
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 7.1e-24 116.3 85 67.1
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 2.1e-23 114.8 88 70.5
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.0e-23 113.2 433 26.6
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.0e-22 112.5 71 81.7
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.5e-21 108.6 87 67.8
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.5e-21 108.6 87 67.8
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.3e-17 95.5 149 39.6
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 4.6e-15 87.0 87 60.9
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 5.1e-14 83.6 90 52.2
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-11 75.5 114 46.5
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 2.6e-10 71.2 114 41.2
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 3.8e-09 67.4 49 61.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.1e-08 65.9 298 26.5
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.4e-08 65.5 73 45.2
Mapoly0004s0193 Marchantia polymorpha HOM05D016773 ORTHO05D019668 7.2e-08 63.2 314 24.8


User provided reference genes

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