Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.0e-138 495.7 245 100.0
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 7.1e-136 487.3 245 98.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 8.1e-132 473.8 245 95.5
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.8e-129 464.9 245 92.2
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.9e-129 464.5 245 92.7
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.4e-128 462.2 245 91.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 5.4e-128 461.1 245 91.4
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.6e-127 459.5 245 91.4
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.6e-127 458.0 245 91.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.6e-127 458.0 245 91.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.0e-126 456.8 245 90.6
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 8.7e-126 453.8 245 90.2
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.8e-115 419.5 250 81.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.5e-114 416.4 260 80.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.4e-112 409.8 249 80.3
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.4e-112 409.1 246 82.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.5e-112 407.9 249 81.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.1e-111 406.0 249 80.3
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 7.9e-111 404.1 249 78.7
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.1e-109 400.2 250 78.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 5.6e-109 397.9 249 78.3
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.1e-108 396.0 288 71.9
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 5.3e-107 391.3 241 80.1
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 5.3e-107 391.3 241 80.1
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-106 390.2 241 79.7
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-106 389.8 272 72.8
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-106 389.8 272 72.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.5e-104 382.5 250 74.8
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 4.6e-103 378.3 250 74.4
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.3e-102 376.7 249 72.7
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 1.8e-102 376.3 247 71.7
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-102 375.2 250 72.0
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 8.7e-102 374.0 248 71.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 8.7e-102 374.0 250 72.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.1e-101 373.6 248 72.6
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.9e-101 372.9 250 72.0
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 7.4e-101 370.9 250 71.6
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 9.6e-101 370.5 250 71.6
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.1e-100 369.4 250 71.6
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.8e-100 369.0 250 70.8
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.8e-100 369.0 250 71.2
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.7e-100 368.6 250 70.4
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 71.0
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 71.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 70.6
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 8.2e-100 367.5 250 72.4
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.8e-99 366.3 250 71.2
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 3.1e-99 365.5 250 72.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 4.1e-99 365.2 248 71.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 6.9e-99 364.4 250 70.4
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 9.0e-99 364.0 249 70.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 9.0e-99 364.0 248 71.4
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 72.2
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 69.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.5e-98 361.7 249 67.9
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 4.5e-98 361.7 248 70.2
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 4.5e-98 361.7 250 70.4
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.6e-98 360.9 251 68.5
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.3e-97 360.1 253 71.1
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.3e-97 360.1 250 68.8
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.3e-97 360.1 246 70.3
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.3e-97 360.1 249 69.9
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.7e-97 359.8 251 69.3
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.8e-97 358.6 251 69.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 6.5e-97 357.8 250 70.0
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.9e-96 356.3 248 70.2
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.9e-96 356.3 246 70.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 3.2e-96 355.5 252 67.1
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.2e-96 355.5 248 70.2
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.2e-96 355.1 246 68.3
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 4.2e-96 355.1 252 68.3
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 5.5e-96 354.8 252 67.1
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 7.2e-96 354.4 252 69.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 9.3e-96 354.0 250 70.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.3e-96 354.0 250 70.4
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 9.3e-96 354.0 250 69.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 9.3e-96 354.0 252 67.1
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 9.3e-96 354.0 250 68.0
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.2e-95 353.6 247 69.6
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.2e-95 353.6 252 67.1
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.7e-95 352.4 252 67.9
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.6e-95 352.1 250 69.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.6e-95 352.1 250 69.6
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 3.6e-95 352.1 249 67.9
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.6e-95 351.7 248 67.3
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.6e-95 351.7 248 67.3
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.1e-95 351.3 251 68.5
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.9e-95 350.9 250 69.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.3e-94 350.1 250 68.8
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.8e-94 349.7 256 66.4
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.8e-94 349.7 245 69.4
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.3e-94 349.4 248 66.9
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 3.0e-94 349.0 249 68.3
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 6.7e-94 347.8 252 65.9
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.1e-93 347.1 251 67.7
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.9e-93 346.3 252 65.9
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.9e-93 346.3 252 66.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.3e-93 345.5 252 66.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.3e-92 343.6 251 66.1
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.3e-92 343.6 253 68.4
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.3e-92 343.6 252 65.1
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 6.3e-92 341.3 252 65.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 6.3e-92 341.3 250 64.4
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.2e-92 340.9 250 64.8
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.5e-90 336.7 238 66.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 4.5e-90 335.1 250 64.4
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.5e-90 335.1 251 64.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 7.7e-90 334.3 243 67.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.0e-89 334.0 238 66.4
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.2e-89 332.8 245 66.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.9e-89 332.4 250 64.4
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.9e-89 332.4 252 65.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.8e-89 332.0 250 64.0
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 2.5e-88 329.3 197 80.2
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.2e-88 328.6 256 63.7
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.6e-87 325.1 248 63.7
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.9e-87 324.3 294 57.1
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.8e-86 323.2 249 62.7
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.8e-84 315.8 250 63.6
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.7e-84 315.5 203 72.4
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.4e-83 312.8 184 78.3
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 5.3e-83 311.6 250 64.4
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.6e-82 309.3 225 67.1
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.1e-80 303.9 239 61.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.9e-80 303.1 245 61.2
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.0e-78 297.4 188 76.1
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 9.1e-75 284.3 175 74.3
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 2.5e-72 276.2 251 58.2
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 6.1e-71 271.6 245 58.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 4.0e-70 268.9 246 56.9
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 9.1e-67 257.7 151 80.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.6e-66 256.9 155 78.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.9e-66 255.0 153 76.5
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-63 247.3 185 67.6
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.6e-63 245.7 192 56.8
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.3e-60 234.6 177 66.1
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.9e-56 223.4 190 64.2
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.9e-56 223.4 190 64.2
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.8e-55 219.5 180 57.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 2.2e-52 209.9 175 58.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 4.0e-46 189.1 182 54.9
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.4e-43 178.7 88 98.9
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.6e-42 177.2 174 46.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.0e-41 172.9 109 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 6.8e-38 161.8 132 58.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 8.3e-28 128.3 84 75.0
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 7.1e-27 125.2 63 85.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.2e-26 124.4 174 38.5
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.5e-24 117.5 73 74.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 9.5e-24 114.8 99 60.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 9.5e-24 114.8 99 60.6
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.4e-21 106.3 108 57.4
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.3e-20 104.4 168 35.1
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.7e-20 104.0 75 70.7
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.0e-14 82.8 94 54.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 6.9e-14 82.0 83 56.6
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.5e-10 69.7 51 64.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 4.6e-10 69.3 182 29.7
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 6.6e-09 65.5 179 29.1
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.5e-08 63.5 54 63.0
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.6e-07 60.8 45 60.0
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 8.1e-07 58.5 52 57.7
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.4e-06 57.0 219 25.1


User provided reference genes

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