Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.3e-154 550.1 352 100.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.6e-128 463.4 353 85.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.2e-122 443.0 352 82.1
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 2.1e-120 436.4 354 80.8
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.1e-117 426.4 353 79.9
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.4e-113 412.9 353 81.3
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 2.7e-112 409.5 353 80.5
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 6.0e-112 408.3 353 79.0
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 5.1e-111 405.2 353 80.7
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 4.4e-107 392.1 328 81.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 2.3e-103 379.8 353 74.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.8e-100 370.2 355 72.7
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.2e-88 330.9 356 66.6
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.7e-87 324.7 352 66.2
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 8.7e-87 324.7 352 64.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-86 323.6 357 64.1
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.5e-86 323.2 352 65.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-85 320.1 357 66.7
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 2.8e-85 319.7 349 66.2
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 2.8e-85 319.7 353 65.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 3.7e-85 319.3 352 66.8
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.3e-85 318.5 352 64.8
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 5.3e-84 315.5 348 65.5
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.6e-83 313.2 355 65.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.4e-83 312.8 354 65.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.5e-83 312.4 352 64.5
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 5.9e-83 312.0 350 64.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 5.9e-83 312.0 350 64.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-82 310.8 352 64.8
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.7e-82 310.5 350 63.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.2e-82 310.1 353 64.9
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.8e-82 309.3 352 64.5
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 5.0e-82 308.9 355 63.7
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 5.0e-82 308.9 352 66.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 8.4e-82 308.1 209 78.5
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-81 307.4 352 65.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.5e-81 306.6 365 61.4
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.2e-81 305.1 356 62.1
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.1e-80 303.5 358 62.6
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 7.9e-80 301.6 348 63.5
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.0e-79 301.2 354 64.1
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.7e-79 298.5 349 61.9
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 6.7e-79 298.5 351 64.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 6.7e-79 298.5 352 62.2
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 8.7e-79 298.1 354 61.3
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.1e-78 297.7 372 57.5
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.9e-78 297.0 352 62.2
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 9.7e-78 294.7 355 55.8
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.8e-77 293.1 355 61.1
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 3.7e-77 292.7 353 60.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.1e-76 291.2 285 71.6
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.8e-76 290.4 352 60.2
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.4e-76 290.0 350 62.9
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 2.4e-76 290.0 382 57.1
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.2e-75 287.7 328 66.2
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.2e-75 287.7 350 60.6
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 5.9e-75 285.4 356 61.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.7e-75 285.0 282 70.2
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.0e-74 284.6 369 59.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.0e-74 284.6 350 60.9
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.3e-74 284.3 348 60.9
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.9e-74 283.1 352 60.8
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 5.0e-74 282.3 349 57.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 6.5e-74 282.0 357 61.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 6.5e-74 282.0 352 61.6
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.9e-73 280.4 349 57.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.9e-73 280.4 348 60.6
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.2e-73 279.6 357 61.3
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.2e-73 279.3 284 71.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.6e-72 277.3 345 58.0
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.7e-72 276.6 360 61.1
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 4.6e-72 275.8 345 61.7
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.0e-71 274.6 287 69.0
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.4e-71 274.2 303 66.3
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.3e-71 273.5 352 57.1
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.3e-71 273.5 347 59.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.0e-71 273.1 353 58.4
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.7e-71 271.9 221 60.6
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.0e-70 270.4 293 67.2
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.0e-70 270.4 396 41.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.8e-69 266.5 242 55.0
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.7e-69 266.2 285 68.8
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.8e-69 265.8 228 58.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 8.2e-69 265.0 285 67.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 8.2e-69 265.0 345 56.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.4e-68 264.2 282 67.7
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.8e-68 263.8 352 52.3
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.4e-68 263.5 230 59.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 9.1e-68 261.5 351 58.1
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 3.4e-67 259.6 348 57.2
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 3.4e-67 259.6 246 53.3
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 8.5e-66 255.0 352 56.5
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 6.7e-63 245.4 349 52.7
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.0e-62 243.8 221 57.0
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 7.4e-62 241.9 347 55.9
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.3e-61 238.8 352 55.4
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 7.7e-59 231.9 311 60.5
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.0e-58 231.5 356 53.7
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.2e-58 230.3 353 54.4
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 5.0e-58 229.2 347 54.8
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 7.2e-57 225.3 424 47.2
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.4e-57 224.9 347 53.0
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.1e-56 223.8 285 51.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 6.1e-56 222.2 285 59.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.4e-55 221.1 362 52.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.8e-55 218.4 374 36.4
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.5e-54 215.3 347 52.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.3e-53 214.5 248 68.5
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.3e-53 214.5 320 40.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.8e-52 210.7 282 59.9
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-48 198.0 349 50.7
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 6.1e-48 195.7 188 53.7
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 2.8e-45 186.8 185 51.4
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.4e-44 183.7 267 58.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.5e-43 179.9 272 57.0
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.2e-42 177.2 161 57.1
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.2e-37 160.6 214 41.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 7.0e-36 155.6 120 59.2
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.6e-33 146.0 174 46.6
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.0e-32 142.1 173 46.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.0e-31 141.7 197 69.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.8e-31 139.0 179 45.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 5.7e-30 136.0 282 48.9
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 5.7e-30 136.0 197 66.0
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 6.4e-29 132.5 243 56.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.8e-28 131.0 291 47.4
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.8e-23 114.4 109 52.3
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.5e-22 111.3 75 64.0
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.8e-19 99.0 142 79.6
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 4.3e-17 93.2 84 53.6
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.6e-17 92.8 81 51.9
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 3.6e-16 90.1 167 68.9
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.4e-15 88.2 60 75.0
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.8e-15 85.9 127 80.3
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 5.4e-12 76.3 133 57.9
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-11 74.3 121 83.5
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 8.6e-10 68.9 66 53.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 2.8e-08 63.9 54 59.3
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.9e-07 58.9 38 65.8


User provided reference genes

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