Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 0.0e+00 1171.4 596 100.0
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 0.0e+00 1125.2 597 96.6
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 0.0e+00 1110.9 596 95.1
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 0.0e+00 1080.9 596 93.0
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 0.0e+00 1080.9 597 93.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 4.1e-312 1073.5 597 92.6
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 7.1e-307 1056.6 598 91.8
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 1.2e-306 1055.8 601 91.5
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 6.7e-305 1050.0 601 91.0
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 1.8e-302 1042.0 600 90.3
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 1.8e-302 1042.0 600 90.3
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 4.3e-296 1020.8 587 90.3
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 7.1e-291 1003.4 596 85.9
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 3.9e-289 997.7 600 86.5
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.2e-267 924.9 596 79.0
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 8.0e-266 920.2 596 78.7
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 5.3e-262 907.5 598 77.1
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.2e-261 906.4 597 77.2
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.7e-260 902.5 604 76.8
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 3.8e-260 901.4 598 76.1
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.9e-259 899.0 597 75.4
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 2.5e-259 898.7 584 77.7
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 5.5e-259 897.5 598 75.9
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.7e-258 894.4 588 77.6
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.0e-257 893.3 602 76.2
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 5.2e-257 891.0 596 75.5
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 8.8e-257 890.2 602 75.7
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 2.0e-256 889.0 596 75.8
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.7e-255 885.9 597 74.5
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.6e-253 879.4 597 75.2
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 2.7e-253 878.6 598 74.7
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 3.5e-253 878.2 596 73.8
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 5.9e-253 877.5 597 74.5
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 2.9e-252 875.2 596 74.7
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 8.5e-252 873.6 532 80.3
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 5.5e-251 870.9 580 75.3
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.6e-250 869.4 603 75.0
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 2.1e-250 869.0 599 73.5
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 3.6e-250 868.2 597 73.4
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 5.2e-249 864.4 603 72.6
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 6.8e-249 864.0 603 73.3
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 2.6e-248 862.1 597 73.2
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 3.4e-248 861.7 599 72.8
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 7.5e-248 860.5 598 73.4
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 7.5e-248 860.5 604 73.8
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.8e-247 858.6 602 71.6
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 1.1e-246 856.7 599 72.8
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 3.1e-246 855.1 560 75.4
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 4.1e-246 854.7 598 72.7
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 5.4e-246 854.4 596 72.7
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 5.4e-246 854.4 538 77.7
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 7.0e-246 854.0 597 72.4
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 5.9e-245 850.9 576 74.1
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.3e-244 849.7 594 71.9
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 6.6e-244 847.4 597 72.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.1e-243 846.7 538 77.0
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.5e-243 846.3 608 72.0
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 7.2e-243 844.0 601 71.9
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 2.8e-242 842.0 541 76.2
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 8.0e-242 840.5 597 71.0
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 1.0e-241 840.1 597 71.2
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.2e-240 836.6 640 68.1
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.5e-240 836.3 595 71.1
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 2.0e-240 835.9 594 71.0
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 2.0e-240 835.9 496 85.3
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 5.7e-240 834.3 618 70.1
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.7e-240 834.3 601 71.2
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 5.7e-240 834.3 595 71.3
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 2.2e-239 832.4 578 72.0
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 2.2e-239 832.4 598 70.6
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.8e-239 832.0 601 71.4
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 6.3e-239 830.9 594 70.9
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-238 829.3 597 71.7
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 2.4e-238 828.9 562 72.8
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 7.0e-238 827.4 598 69.2
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.6e-237 826.2 577 72.3
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.5e-235 819.7 594 70.0
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 5.6e-235 817.8 597 69.8
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 2.9e-231 805.4 543 73.8
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.7e-231 805.1 603 71.3
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 5.6e-227 791.2 538 72.5
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.1e-225 786.9 634 66.1
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 1.8e-225 786.2 596 69.0
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 4.4e-224 781.6 536 72.2
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.9e-222 776.2 553 71.1
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 7.0e-222 774.2 523 76.1
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 7.0e-222 774.2 558 70.3
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 3.5e-221 771.9 542 70.7
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 2.3e-220 769.2 557 69.8
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 4.7e-218 761.5 537 71.9
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 5.2e-217 758.1 597 66.2
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 2.0e-216 756.1 538 70.3
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 9.9e-216 753.8 528 72.2
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 1.2e-213 746.9 524 71.6
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 2.7e-213 745.7 527 73.4
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 4.6e-213 745.0 531 71.4
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 8.1e-210 734.2 461 76.4
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 1.0e-204 717.2 597 65.5
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 3.1e-201 705.7 442 77.8
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.3e-201 704.9 494 72.7
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 5.8e-200 701.4 494 72.7
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 4.6e-197 691.8 527 67.6
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 4.8e-194 681.8 510 67.1
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 2.7e-189 666.0 551 62.6
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.0e-188 662.5 505 66.3
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 4.3e-187 658.7 539 63.5
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 1.9e-179 633.3 384 78.6
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.2e-174 615.9 507 63.5
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 5.7e-163 578.6 447 64.7
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 5.5e-158 562.0 392 72.4
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 7.0e-121 438.7 346 61.3
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-89 335.1 393 48.6
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.9e-87 326.6 200 79.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-65 254.6 274 50.7
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-55 221.9 208 53.4
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 9.0e-52 209.1 154 68.2
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 1.2e-48 198.7 143 68.5
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 9.7e-46 189.1 102 96.1
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.3e-37 159.8 100 75.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.1e-32 144.8 101 67.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.9e-25 121.7 107 67.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 9.4e-25 119.4 106 60.4
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.3e-23 114.8 177 42.4
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 2.6e-22 111.3 66 78.8
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 3.1e-20 104.4 76 67.1
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 4.1e-20 104.0 65 83.1
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 4.1e-20 104.0 65 83.1
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 5.4e-20 103.6 129 50.4
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 2.7e-19 101.3 68 79.4
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 2.7e-19 101.3 68 79.4
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.7e-16 91.3 54 79.6
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.8e-15 88.6 68 66.2
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 1.0e-07 62.8 122 37.7
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.2e-06 59.3 38 68.4


User provided reference genes

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