Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.4e-93 346.3 175 100.0
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.5e-74 282.3 183 81.4
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 2.1e-49 199.5 189 59.8
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 1.2e-41 173.7 189 50.8
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 4.7e-41 171.8 190 51.1
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 6.1e-41 171.4 190 52.1
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.0e-40 170.6 189 50.3
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.0e-40 170.6 189 50.3
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 1.0e-40 170.6 189 50.3
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.8e-40 169.9 189 50.3
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 2.6e-39 166.0 195 50.3
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.1e-37 160.6 192 50.0
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.4e-37 160.2 194 51.0
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 1.8e-37 159.8 197 48.2
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 3.2e-37 159.1 192 49.5
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 5.9e-36 154.8 178 52.8
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 5.9e-36 154.8 193 46.1
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.8e-36 154.5 192 49.0
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 1.7e-35 153.3 193 47.2
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.7e-35 153.3 194 47.4
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.5e-34 149.4 193 47.7
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 9.5e-34 147.5 193 44.6
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.2e-33 147.1 190 43.7
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.7e-33 145.2 193 45.1
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.7e-33 145.2 195 46.2
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 8.3e-30 134.4 191 42.9
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 1.9e-29 133.3 191 42.9
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 7.0e-29 131.3 179 43.0
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 7.0e-29 131.3 191 42.4
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.2e-28 130.6 191 41.9
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 1.6e-28 130.2 191 42.4
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 7.3e-26 121.3 194 37.1
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.8e-25 119.4 193 42.5
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.8e-25 119.4 197 36.5
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.1e-24 117.5 200 38.5
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.1e-24 117.5 186 40.9
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 1.8e-24 116.7 203 39.4
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 4.0e-24 115.5 194 36.1
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 6.8e-24 114.8 226 35.8
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 6.8e-24 114.8 180 40.6
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 6.8e-24 114.8 196 37.2
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 8.9e-24 114.4 204 36.3
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 8.9e-24 114.4 194 39.7
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.2e-23 114.0 197 37.1
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 1.2e-23 114.0 188 39.9
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 1.2e-23 114.0 209 39.2
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.5e-23 113.6 200 38.0
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 1.5e-23 113.6 195 39.0
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 3.4e-23 112.5 195 36.4
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 4.4e-23 112.1 193 38.3
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 4.4e-23 112.1 203 36.0
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 4.4e-23 112.1 198 37.4
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 5.8e-23 111.7 226 35.8
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 7.5e-23 111.3 186 36.0
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 9.8e-23 110.9 194 35.6
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 9.8e-23 110.9 199 39.7
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.7e-22 110.2 204 37.3
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 2.9e-22 109.4 201 39.3
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 2.9e-22 109.4 203 36.9
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 2.9e-22 109.4 199 39.2
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 4.9e-22 108.6 188 38.3
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 4.9e-22 108.6 192 37.5
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 4.9e-22 108.6 204 36.3
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 8.3e-22 107.8 194 35.1
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.3e-22 107.8 196 35.7
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.1e-21 107.5 194 38.1
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.1e-21 107.5 195 35.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.1e-21 107.5 202 34.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.4e-21 107.1 209 34.9
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.4e-21 107.1 192 35.9
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.4e-21 107.1 208 35.6
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.4e-21 107.1 197 36.0
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 1.9e-21 106.7 192 38.0
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.9e-21 106.7 192 35.4
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.9e-21 106.7 195 34.9
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.9e-21 106.7 202 35.1
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 2.4e-21 106.3 196 36.7
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 3.2e-21 105.9 199 37.7
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 3.2e-21 105.9 192 37.5
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 3.2e-21 105.9 206 34.5
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.1e-21 105.5 206 33.5
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 4.1e-21 105.5 210 36.7
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 4.1e-21 105.5 211 36.5
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 5.4e-21 105.1 189 38.1
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 7.1e-21 104.8 207 34.8
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 9.2e-21 104.4 207 33.3
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.2e-20 104.0 206 34.5
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.6e-20 103.6 192 36.5
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.6e-20 103.6 196 36.7
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.1e-20 103.2 187 33.7
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 2.1e-20 103.2 197 33.0
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 2.7e-20 102.8 186 36.6
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 4.6e-20 102.1 196 34.7
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 4.6e-20 102.1 196 36.2
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 4.6e-20 102.1 172 38.4
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 6.0e-20 101.7 200 35.5
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 6.0e-20 101.7 207 32.4
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 6.0e-20 101.7 179 39.1
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 1.0e-19 100.9 192 32.3
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.3e-19 100.5 204 34.3
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.3e-19 100.5 193 34.7
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.7e-19 100.1 211 33.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.7e-19 100.1 207 31.9
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.3e-19 99.8 207 34.8
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 5.1e-19 98.6 194 35.1
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 6.6e-19 98.2 196 36.2
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 6.6e-19 98.2 191 35.1
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 8.6e-19 97.8 189 34.4
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 8.6e-19 97.8 189 33.3
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 8.6e-19 97.8 202 32.7
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.1e-18 97.4 191 35.1
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.5e-18 97.1 209 33.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.5e-18 97.1 204 35.3
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 2.5e-18 96.3 206 32.0
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 3.3e-18 95.9 196 33.2
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 7.3e-18 94.7 179 37.4
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 9.5e-18 94.4 204 33.3
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 9.5e-18 94.4 195 33.8
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 9.5e-18 94.4 204 35.3
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 1.6e-17 93.6 190 35.8
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.1e-17 93.2 204 30.4
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 2.8e-17 92.8 175 36.6
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.8e-17 92.8 178 36.5
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 3.6e-17 92.4 214 29.9
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 3.6e-17 92.4 214 29.9
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 6.2e-17 91.7 190 35.8
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.1e-16 90.9 201 38.3
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 1.1e-16 90.9 203 30.5
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.1e-16 90.9 189 32.8
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.4e-16 90.5 203 36.5
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.4e-16 90.5 202 31.2
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.4e-16 90.5 202 31.2
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 1.4e-16 90.5 197 33.5
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 1.8e-16 90.1 187 36.9
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.3e-16 89.7 192 33.9
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 3.1e-16 89.4 194 34.0
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 4.0e-16 89.0 182 35.2
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 8.9e-16 87.8 169 35.5
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.5e-15 87.0 182 29.7
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.5e-15 87.0 208 33.2
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 3.4e-15 85.9 207 31.4
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 9.9e-15 84.3 194 34.0
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 1.7e-14 83.6 68 55.9
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 8.4e-14 81.3 82 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 1.1e-13 80.9 201 30.3
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 2.4e-13 79.7 222 28.4
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 4.1e-13 79.0 179 29.1
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 5.4e-13 78.6 174 33.3
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 5.4e-13 78.6 170 34.1
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.1e-13 78.2 199 31.7
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 9.2e-13 77.8 108 39.8
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 2.1e-12 76.6 204 30.9
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 2.7e-12 76.3 169 32.0
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 3.5e-12 75.9 174 33.9
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 4.6e-12 75.5 221 29.4
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 7.8e-12 74.7 174 37.4
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-11 73.9 68 47.1
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 3.0e-11 72.8 154 37.0
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.0e-11 72.8 64 54.7
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 3.0e-11 72.8 68 45.6
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 3.0e-11 72.8 68 47.1
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 5.1e-11 72.0 61 52.5
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 6.6e-11 71.6 68 50.0
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 8.6e-11 71.2 103 49.5
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 8.6e-11 71.2 103 49.5
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.6e-11 71.2 68 44.1
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.1e-10 70.9 51 64.7
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 7.3e-10 68.2 178 30.3
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 2.1e-09 66.6 131 36.6
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 2.1e-09 66.6 131 36.6
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 1.2e-07 60.8 103 35.9
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.5e-07 60.5 147 29.3
BcaC01g03001 Brassica carinata HOM05D003497 ORTHO05D003964 2.0e-07 60.1 142 35.9
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 7.6e-07 58.2 181 27.6
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 1.3e-06 57.4 68 41.2
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.3e-06 57.4 83 38.6
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 8.4e-06 54.7 90 34.4


User provided reference genes

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