Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 2.5e-45 185.3 106 100.0
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.2e-42 176.4 106 94.3
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 2.0e-42 175.6 106 93.4
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.3e-41 172.9 106 92.5
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 7.3e-37 157.1 106 84.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 3.6e-36 154.8 106 81.1
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 4.9e-33 144.4 107 79.4
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.1e-32 143.3 106 81.1
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 2.7e-31 138.7 107 78.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 2.3e-30 135.6 104 78.8
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 1.9e-29 132.5 107 74.8
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 5.6e-29 131.0 104 76.9
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 6.2e-28 127.5 106 72.6
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 6.2e-28 127.5 106 72.6
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 1.0e-27 126.7 101 77.2
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 1.0e-27 126.7 106 72.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.0e-27 126.7 106 73.6
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 1.0e-27 126.7 101 77.2
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 3.2e-24 115.2 106 67.0
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 4.1e-24 114.8 106 67.0
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 7.8e-23 110.5 84 79.8
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.0e-18 95.9 106 59.4
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.0e-18 95.9 106 59.4
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 4.4e-18 94.7 107 57.0
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 7.5e-18 94.0 106 57.5
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.2e-17 92.4 106 58.5
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 4.9e-17 91.3 107 56.1
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 6.4e-17 90.9 108 57.4
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 8.3e-17 90.5 106 57.5
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.9e-16 89.4 106 53.8
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 7.1e-16 87.4 106 55.7
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 7.1e-16 87.4 106 55.7
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 9.2e-16 87.0 106 53.8
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.7e-15 85.5 106 54.7
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.7e-15 85.5 106 54.7
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 3.5e-15 85.1 106 54.7
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 7.8e-15 84.0 116 50.9
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 1.0e-14 83.6 106 53.8
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 2.3e-14 82.4 109 52.3
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 5.1e-14 81.3 108 52.8
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 8.6e-14 80.5 107 52.3
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.9e-13 79.3 109 53.2
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.9e-13 79.3 106 52.8
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 2.5e-13 79.0 106 52.8
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 2.5e-13 79.0 102 51.0
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 7.3e-13 77.4 100 54.0
Aa31LG4G10590 Aethionema arabicum HOM05D007293 ORTHO05D009143 9.5e-13 77.0 64 71.9
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.6e-12 76.3 107 52.3
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.6e-12 76.3 107 51.4
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 3.6e-12 75.1 110 51.8
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 6.2e-12 74.3 107 49.5
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 1.1e-11 73.6 107 49.5
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.4e-11 73.2 107 49.5
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 2.3e-11 72.4 108 50.9
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 2.3e-11 72.4 99 51.5
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 6.8e-11 70.9 117 47.0
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 1.2e-10 70.1 54 70.4
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.5e-10 69.7 110 50.9
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.6e-10 68.9 89 57.3
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 3.4e-10 68.6 95 53.7
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 5.8e-10 67.8 102 49.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 7.6e-10 67.4 111 45.9
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 7.6e-10 67.4 112 49.1
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.7e-09 66.2 108 47.2
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 1.7e-09 66.2 110 45.5
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 4.9e-09 64.7 108 49.1
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 4.9e-09 64.7 107 47.7
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 6.4e-09 64.3 108 47.2
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 6.4e-09 64.3 101 45.5
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 1.4e-08 63.2 100 50.0
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.9e-08 62.8 108 45.4
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.9e-08 62.8 106 44.3
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 4.1e-08 61.6 105 44.8
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 5.4e-08 61.2 61 60.7
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 5.4e-08 61.2 111 42.3
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 7.1e-08 60.8 107 49.5
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 7.1e-08 60.8 107 45.8
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 9.2e-08 60.5 108 48.1
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.2e-07 60.1 105 42.9
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.2e-07 60.1 94 45.7
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 2.1e-07 59.3 102 46.1
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.7e-07 58.9 106 43.4
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 4.6e-07 58.2 105 41.0
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 4.6e-07 58.2 47 68.1
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 6.0e-07 57.8 101 46.5
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 7.8e-07 57.4 107 45.8
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 7.8e-07 57.4 107 44.9
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 7.8e-07 57.4 109 42.2
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 1.0e-06 57.0 105 47.6
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.3e-06 56.6 110 46.4
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.3e-06 56.6 107 44.9
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.0e-06 55.5 102 42.2
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 5.1e-06 54.7 104 43.3
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 8.6e-06 53.9 50 60.0


User provided reference genes

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