Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 7.1e-45 184.5 130 100.0
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.3e-38 163.7 131 74.8
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 3.0e-35 152.5 130 63.1
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-34 150.6 131 62.6
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-34 150.6 131 59.5
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-34 150.6 131 62.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-34 148.7 86 82.6
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 4.3e-34 148.7 86 82.6
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 7.4e-34 147.9 128 62.5
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 7.4e-34 147.9 83 83.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 7.4e-34 147.9 83 83.1
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 4.8e-33 145.2 78 87.2
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-32 144.1 82 82.9
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-32 144.1 82 82.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-32 143.3 81 81.5
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-32 143.3 81 81.5
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-32 142.9 82 81.7
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-32 142.9 82 81.7
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 5.3e-32 141.7 130 56.9
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 9.0e-32 141.0 82 81.7
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.4e-31 139.0 75 88.0
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-30 137.5 82 79.3
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.4e-29 133.7 82 86.6
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.5e-29 132.9 79 79.7
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 3.6e-28 129.0 85 75.3
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 3.6e-28 129.0 85 75.3
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 3.6e-28 129.0 85 75.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 6.1e-28 128.3 86 75.6
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 5.1e-27 125.2 85 71.8
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 5.1e-27 125.2 85 71.8
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 7.4e-26 121.3 87 71.3
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 7.4e-26 121.3 87 71.3
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 7.4e-26 121.3 78 75.6
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 9.7e-26 120.9 78 79.5
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 3.7e-25 119.0 87 70.1
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 3.7e-25 119.0 87 70.1
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.2e-25 117.9 86 70.9
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.4e-24 117.1 84 75.0
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.0e-23 113.2 77 70.1
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.9e-22 109.4 77 72.7
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.8e-22 109.0 74 74.3
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 4.2e-21 105.5 73 74.0
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 7.9e-20 101.3 62 72.6
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 5.1e-19 98.6 85 64.7
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 8.8e-19 97.8 84 59.5
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.8e-16 90.1 82 61.0
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.8e-16 90.1 77 66.2
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.4e-16 89.7 95 56.8
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.4e-16 89.7 95 56.8
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.1e-16 89.4 95 56.8
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.5e-15 87.0 79 60.8
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.4e-15 85.9 77 62.3
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 5.9e-15 85.1 85 60.0
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 7.7e-15 84.7 77 61.0
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 7.7e-15 84.7 76 60.5
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 7.7e-15 84.7 77 62.3
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.3e-14 84.0 84 52.4
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.7e-14 83.6 82 56.1
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 2.2e-14 83.2 82 57.3
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.2e-14 83.2 86 52.3
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 2.2e-14 83.2 77 62.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.9e-14 82.8 76 60.5
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 2.9e-14 82.8 76 57.9
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 3.8e-14 82.4 89 55.1
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 5.0e-14 82.0 86 54.7
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 6.5e-14 81.6 76 59.2
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 6.5e-14 81.6 80 61.2
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.1e-13 80.9 75 57.3
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.4e-13 80.5 76 60.5
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.4e-13 80.5 76 57.9
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.9e-13 80.1 89 56.2
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.5e-13 79.7 82 52.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.5e-13 79.7 81 55.6
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.5e-13 79.7 84 50.0
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 3.2e-13 79.3 84 56.0
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 5.5e-13 78.6 80 56.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 7.2e-13 78.2 88 54.5
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.2e-13 78.2 73 61.6
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.2e-13 78.2 79 57.0
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 7.2e-13 78.2 82 51.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 7.2e-13 78.2 76 56.6
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 9.4e-13 77.8 83 55.4
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 9.4e-13 77.8 81 56.8
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.4e-13 77.8 79 57.0
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.4e-13 77.8 83 54.2
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.2e-12 77.4 83 55.4
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.2e-12 77.4 85 52.9
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.6e-12 77.0 81 56.8
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 2.1e-12 76.6 81 54.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 2.1e-12 76.6 75 56.0
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.1e-12 76.6 86 48.8
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-12 76.6 75 56.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.7e-12 76.3 82 53.7
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.7e-12 76.3 83 56.6
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.6e-12 75.9 73 60.3
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 3.6e-12 75.9 78 50.0
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 4.7e-12 75.5 80 52.5
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 8.0e-12 74.7 70 62.9
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 8.0e-12 74.7 83 50.6
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 8.0e-12 74.7 86 47.7
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.0e-11 74.3 74 56.8
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.0e-11 74.3 88 46.6
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.0e-11 74.3 87 50.6
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.0e-11 74.3 81 54.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.0e-11 74.3 83 53.0
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.8e-11 73.6 72 56.9
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.8e-11 73.6 75 53.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.3e-11 73.2 83 53.0
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.3e-11 73.2 77 53.2
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.0e-11 72.8 74 58.1
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-11 72.4 81 51.9
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 3.9e-11 72.4 81 54.3
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 6.7e-11 71.6 84 52.4
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 6.7e-11 71.6 73 54.8
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 8.8e-11 71.2 79 54.4
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 8.8e-11 71.2 79 54.4
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.1e-10 70.9 73 54.8
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.0e-10 70.1 80 47.5
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.6e-10 69.7 85 47.1
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.6e-10 69.7 71 53.5
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 2.6e-10 69.7 70 54.3
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.6e-10 69.7 75 53.3
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 4.4e-10 68.9 81 48.1
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 7.4e-10 68.2 80 52.5
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.7e-09 67.0 75 53.3
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.2e-09 66.6 79 48.1
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.8e-09 66.2 87 44.8
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.8e-09 66.2 75 52.0
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 8.2e-09 64.7 77 46.8
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.8e-08 63.5 82 46.3
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.8e-08 63.5 79 46.8
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.1e-08 62.8 87 47.1
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.1e-08 62.8 77 48.1
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.1e-08 62.8 84 46.4
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 7.0e-08 61.6 73 50.7
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.2e-07 60.8 77 46.8
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.6e-07 60.5 79 51.9
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.5e-07 58.9 67 50.7
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.2e-06 56.6 71 45.1


User provided reference genes

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