Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.6e-244 849.0 431 100.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 7.6e-242 840.1 431 98.1
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 7.6e-234 813.5 431 95.4
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.7e-230 802.4 431 94.7
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.6e-226 788.5 431 93.3
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.7e-225 785.8 428 93.2
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 9.3e-224 780.0 431 92.6
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 3.5e-223 778.1 431 92.3
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 3.5e-223 778.1 431 92.3
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.8e-220 768.5 431 91.4
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.0e-219 764.6 433 91.2
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.1e-216 756.5 431 90.5
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.9e-213 745.7 426 88.0
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.8e-206 722.6 425 84.9
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.1e-203 711.8 427 84.1
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 9.0e-203 710.3 427 83.6
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 3.2e-200 701.8 432 81.5
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 4.2e-200 701.4 432 82.4
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 5.5e-200 701.0 430 83.5
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 4.3e-197 691.4 432 81.9
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.7e-196 689.5 433 81.8
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 1.7e-196 689.5 433 81.8
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 6.3e-196 687.6 437 80.5
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.4e-195 685.6 442 78.3
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 2.4e-195 685.6 437 79.9
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 6.9e-195 684.1 433 81.1
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 2.0e-194 682.6 435 80.7
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.6e-194 682.2 433 81.3
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.4e-194 681.8 424 82.3
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 5.9e-194 681.0 429 80.7
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 7.7e-194 680.6 433 80.8
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.0e-193 680.2 428 80.1
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 1.3e-193 679.9 433 80.1
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.1e-192 676.8 380 88.2
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 9.4e-192 673.7 429 80.7
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.7e-191 672.2 430 79.5
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 6.1e-191 671.0 434 79.3
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 6.1e-191 671.0 421 81.2
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 3.0e-190 668.7 437 78.9
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 3.0e-190 668.7 419 81.9
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.1e-189 666.8 430 80.7
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 4.4e-189 664.8 411 82.0
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.3e-188 663.3 384 87.5
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.7e-188 662.9 370 88.9
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.1e-187 660.2 428 77.6
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.4e-187 659.8 434 77.6
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 5.3e-187 657.9 419 80.7
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 1.5e-186 656.4 405 82.0
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 3.5e-186 655.2 416 80.8
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.5e-186 654.8 409 80.9
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.0e-185 653.7 456 75.0
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.3e-185 653.3 430 79.1
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.3e-185 653.3 441 78.2
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.2e-185 652.5 397 83.1
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.2e-185 652.5 435 78.2
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 5.0e-185 651.4 432 78.5
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.1e-184 650.2 401 82.3
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.1e-184 650.2 425 79.1
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 3.2e-184 648.7 416 81.2
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 5.5e-184 647.9 435 76.6
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 9.4e-184 647.1 435 76.3
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.2e-183 646.7 430 78.4
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.2e-183 646.7 429 79.0
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.2e-183 646.7 439 75.4
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.6e-183 646.4 429 79.7
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.6e-183 646.4 425 77.4
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.6e-183 645.2 431 77.0
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 4.7e-183 644.8 432 77.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.4e-182 643.3 432 78.0
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 1.8e-182 642.9 403 81.6
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.8e-182 642.9 386 85.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 8.8e-182 640.6 415 77.6
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 8.8e-182 640.6 431 78.2
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 5.7e-181 637.9 418 79.7
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.7e-180 635.2 385 83.6
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 6.3e-180 634.4 365 86.3
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 8.2e-180 634.0 397 82.6
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 9.1e-179 630.6 433 76.4
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.0e-177 627.1 415 78.3
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.7e-177 626.3 416 78.1
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 3.8e-177 625.2 433 76.2
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 2.5e-176 622.5 412 78.6
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 2.5e-176 622.5 415 78.1
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 3.2e-176 622.1 343 88.6
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.1e-175 619.4 435 74.7
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.7e-175 619.0 434 74.7
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.7e-175 618.2 416 77.4
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.0e-175 617.5 416 77.2
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 8.0e-175 617.5 431 75.4
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 3.0e-174 615.5 414 77.1
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.0e-174 615.5 414 77.1
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.2e-173 613.6 416 76.7
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 3.3e-173 612.1 402 77.9
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.8e-172 609.0 388 79.9
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 6.3e-172 607.8 364 84.3
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.8e-171 606.3 433 73.2
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.8e-171 606.3 384 80.5
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-171 605.9 328 90.5
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 5.0e-169 598.2 410 74.1
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 1.5e-168 596.7 421 72.2
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 5.5e-168 594.7 412 75.2
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.2e-167 593.6 437 73.2
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 3.6e-167 592.0 402 72.9
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.7e-164 582.0 411 72.5
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 5.4e-163 578.2 435 73.1
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 7.0e-163 577.8 435 72.6
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 7.0e-163 577.8 369 76.7
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 7.0e-163 577.8 399 73.2
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.0e-161 573.9 360 77.5
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.5e-160 570.1 430 70.2
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.5e-160 570.1 314 87.6
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 8.0e-159 564.3 384 77.9
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 7.0e-155 551.2 417 68.8
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 7.5e-149 531.2 350 76.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.0e-146 523.1 371 75.5
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.3e-145 520.4 428 64.7
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.0e-145 519.2 375 70.4
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 8.6e-145 517.7 283 89.4
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.5e-144 516.9 423 65.0
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.1e-143 513.1 428 65.0
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.1e-143 513.1 434 63.1
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 2.9e-140 502.7 425 63.5
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.9e-139 500.0 428 63.1
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 2.3e-137 493.0 427 62.3
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 3.9e-137 492.3 426 62.7
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 3.9e-137 492.3 426 62.7
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.5e-136 489.6 443 60.0
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 7.3e-136 488.0 307 81.1
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 4.7e-135 485.3 428 61.9
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 2.3e-134 483.0 428 61.7
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 2.1e-130 469.9 268 86.2
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 2.0e-125 453.4 441 58.3
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 1.1e-123 447.6 380 60.5
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.0e-121 439.5 350 61.1
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-119 434.1 314 69.7
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 5.4e-115 418.7 352 66.2
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.2e-114 417.5 312 66.3
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-112 411.0 282 72.7
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 5.6e-112 408.7 301 72.1
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 7.9e-106 388.3 224 86.2
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 4.5e-85 319.3 224 71.9
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-78 297.4 234 68.8
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-70 271.6 192 71.4
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.9e-68 263.5 201 65.2
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.1e-67 261.5 289 52.6
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 2.8e-63 246.9 180 70.0
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.8e-62 244.2 276 49.3
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-61 240.4 180 68.9
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 3.4e-56 223.4 149 71.1
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 3.5e-53 213.4 176 63.6
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-51 208.0 170 65.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.6e-50 203.4 311 38.9
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 3.7e-47 193.4 176 60.8
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 6.3e-47 192.6 101 91.1
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.1e-46 190.3 148 69.6
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 5.9e-45 186.0 101 88.1
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.3e-43 180.3 100 88.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 6.1e-42 176.0 104 83.7
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-41 174.5 169 58.6
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-40 171.8 100 84.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 5.6e-35 152.9 77 90.9
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.6e-35 152.9 76 93.4
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 2.1e-34 151.0 122 67.2
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 6.2e-34 149.4 212 39.2
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.0e-33 148.7 135 61.5
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.2e-32 145.2 90 85.6
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 8.6e-28 129.0 72 88.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 8.9e-25 119.0 74 81.1
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 7.1e-22 109.4 183 42.6
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.9e-19 101.3 106 55.7
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 8.4e-15 85.9 49 87.8
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.5e-11 75.1 141 37.6
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.5e-11 75.1 141 37.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.5e-11 74.3 53 66.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-09 68.2 36 91.7
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 5.2e-09 66.6 59 62.7
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 4.9e-07 60.1 62 61.3


User provided reference genes

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