Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.7e-31 137.9 64 100.0
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.2e-29 132.5 64 95.3
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 4.9e-28 127.1 60 95.0
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.6e-26 122.1 64 87.5
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.5e-26 120.9 64 85.9
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.7e-25 118.6 60 88.3
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.8e-25 117.5 60 86.7
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.0e-25 117.1 60 86.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 5.0e-25 117.1 60 86.7
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.6e-25 116.7 60 85.0
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 8.6e-25 116.3 60 86.7
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.5e-24 115.5 60 85.0
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.5e-24 115.5 60 85.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.9e-24 115.2 64 81.2
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.5e-24 114.8 60 85.0
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.5e-24 114.8 59 86.4
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 4.3e-24 114.0 60 83.3
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-24 114.0 60 83.3
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 4.3e-24 114.0 60 83.3
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 7.3e-24 113.2 57 89.5
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 7.3e-24 113.2 60 83.3
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 9.5e-24 112.8 57 89.5
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 9.5e-24 112.8 60 81.7
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 9.5e-24 112.8 60 81.7
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 9.5e-24 112.8 60 83.3
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.6e-23 112.1 60 83.3
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.1e-23 111.7 59 84.7
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 2.8e-23 111.3 64 78.1
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 8.0e-23 109.8 61 77.0
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 8.0e-23 109.8 62 75.8
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 8.0e-23 109.8 64 75.0
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 8.0e-23 109.8 61 77.0
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.0e-22 109.4 64 75.0
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.0e-22 109.4 57 84.2
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.0e-22 109.4 64 75.0
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.0e-22 109.4 64 75.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.4e-22 109.0 64 75.0
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.8e-22 108.6 64 75.0
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.8e-22 108.6 64 75.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.8e-22 108.6 64 75.0
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.8e-22 108.6 64 75.0
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.8e-22 108.6 64 75.0
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.8e-22 108.6 64 75.0
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 2.3e-22 108.2 51 92.2
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.3e-22 108.2 64 73.4
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.0e-22 107.8 64 75.0
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.0e-22 107.5 64 75.0
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.0e-22 107.5 60 75.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.0e-22 107.5 60 78.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 5.2e-22 107.1 64 75.0
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 5.2e-22 107.1 64 73.4
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 8.9e-22 106.3 52 86.5
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 8.9e-22 106.3 60 73.3
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 8.9e-22 106.3 64 71.9
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 8.9e-22 106.3 64 71.9
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 8.9e-22 106.3 62 72.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.2e-21 105.9 57 82.5
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.2e-21 105.9 63 76.2
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.2e-21 105.9 60 76.7
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.2e-21 105.9 64 71.9
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.2e-21 105.9 60 75.0
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.2e-21 105.9 64 78.1
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.5e-21 105.5 61 77.0
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.5e-21 105.5 62 72.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.5e-21 105.5 64 71.9
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.0e-21 105.1 64 71.9
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.0e-21 105.1 60 75.0
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.6e-21 104.8 59 76.3
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 2.6e-21 104.8 63 71.4
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 3.4e-21 104.4 52 86.5
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.4e-21 104.4 64 73.4
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 3.4e-21 104.4 62 74.2
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.4e-21 104.4 64 75.0
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 5.7e-21 103.6 52 86.5
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 5.7e-21 103.6 52 86.5
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 9.8e-21 102.8 58 74.1
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 9.8e-21 102.8 58 77.6
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.3e-20 102.4 58 77.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.3e-20 102.4 58 77.6
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.3e-20 102.4 58 77.6
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.2e-20 101.7 64 71.9
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.9e-20 101.3 60 70.0
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.9e-20 101.3 60 70.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 3.7e-20 100.9 60 70.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.7e-20 100.9 64 70.3
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.9e-20 100.5 64 70.3
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 4.9e-20 100.5 59 72.9
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.9e-20 100.5 62 74.2
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 4.9e-20 100.5 62 74.2
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 8.3e-20 99.8 64 75.0
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 8.3e-20 99.8 50 86.0
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.3e-20 99.8 60 68.3
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.1e-19 99.4 63 71.4
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.4e-19 99.0 61 73.8
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.8e-19 98.6 61 73.8
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.8e-19 98.6 63 73.0
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.4e-19 98.2 52 84.6
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.4e-19 98.2 52 84.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.1e-19 97.4 61 70.5
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 5.4e-19 97.1 52 82.7
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.0e-19 96.7 60 68.3
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 9.2e-19 96.3 60 66.7
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 9.2e-19 96.3 52 80.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-18 95.9 71 64.8
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.2e-18 95.9 60 66.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.0e-18 95.1 56 71.4
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.7e-18 94.7 51 78.4
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.5e-18 94.4 51 76.5
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 4.6e-18 94.0 60 66.7
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 7.8e-18 93.2 51 74.5
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 7.8e-18 93.2 51 74.5
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 7.8e-18 93.2 51 74.5
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 7.8e-18 93.2 51 74.5
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 7.8e-18 93.2 66 66.7
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.3e-17 92.4 51 74.5
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.7e-17 92.0 64 64.1
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.0e-17 91.3 63 61.9
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 6.6e-17 90.1 51 72.5
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 8.6e-17 89.7 56 75.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.5e-16 89.0 54 70.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.5e-16 89.0 51 72.5
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 4.0e-14 80.9 51 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 3.4e-13 77.8 51 62.7
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 9.8e-13 76.3 77 51.9
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 2.2e-12 75.1 51 58.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.9e-12 74.7 50 56.0
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.1e-11 72.8 49 63.3
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.2e-11 71.2 35 91.4
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 7.0e-11 70.1 35 88.6
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 6.0e-10 67.0 35 85.7
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 6.0e-10 67.0 50 64.0
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 6.0e-10 67.0 50 64.0
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.0e-09 66.2 37 75.7
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 1.3e-09 65.9 35 82.9
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.3e-09 65.9 35 88.6
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 3.0e-09 64.7 33 90.9
C06p40430 Brassica napus HOM05D030737 ORTHO05D028024 5.0e-09 63.9 39 71.8
BolC6t39389H Brassica oleracea HOM05D030737 ORTHO05D028024 5.0e-09 63.9 39 71.8
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 5.0e-09 63.9 34 85.3
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.6e-09 63.5 40 75.0
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 8.6e-09 63.2 34 82.4
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.1e-08 62.8 59 52.5
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.5e-08 62.4 35 77.1
A07p35770 Brassica napus HOM05D030737 ORTHO05D028024 3.6e-07 57.8 30 73.3
Ah.15g093720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 8.9e-06 53.1 26 84.6
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 8.9e-06 53.1 30 76.7


User provided reference genes

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