Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 9.9e-58 226.5 108 100.0
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.3e-52 209.5 108 94.4
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 2.8e-52 208.4 108 91.7
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 7.1e-48 193.7 108 88.9
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 4.9e-41 171.0 111 78.4
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 1.6e-31 139.4 115 61.7
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 1.6e-31 139.4 115 61.7
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 3.6e-31 138.3 109 61.5
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 3.6e-31 138.3 109 61.5
BraA07t31151Z Brassica rapa HOM05D002318 ORTHO05D004713 4.6e-31 137.9 106 71.7
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 7.9e-31 137.1 111 62.2
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.8e-30 136.0 116 63.8
C06p40600 Brassica napus HOM05D002953 ORTHO05D003249 3.0e-30 135.2 108 71.3
BolC6t39372H Brassica oleracea HOM05D002953 ORTHO05D003249 3.0e-30 135.2 108 71.3
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 8.8e-30 133.7 108 68.5
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 5.7e-29 131.0 118 62.7
A07p35630 Brassica napus HOM05D002318 ORTHO05D004713 9.7e-29 130.2 111 66.7
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 2.8e-28 128.6 115 61.7
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 4.8e-28 127.9 117 61.5
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 4.8e-28 127.9 119 61.3
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 8.2e-28 127.1 86 72.1
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 5.3e-27 124.4 116 59.5
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 5.3e-27 124.4 116 59.5
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 7.7e-26 120.6 119 55.5
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 7.7e-26 120.6 119 55.5
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 3.8e-25 118.2 85 70.6
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 3.8e-25 118.2 85 70.6
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 3.8e-25 118.2 85 70.6
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 8.5e-25 117.1 89 69.7
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 1.1e-24 116.7 114 55.3
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 7.9e-23 110.5 104 56.7
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 1.0e-22 110.2 115 54.8
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 3.0e-22 108.6 123 54.5
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.5e-21 106.3 115 52.2
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 1.3e-20 103.2 71 76.1
BcaC06g35137 Brassica carinata HOM05D007541 ORTHO05D009404 8.0e-15 84.0 101 48.5
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 1.4e-14 83.2 111 46.8
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 3.9e-14 81.6 65 64.6
BcaB03g14074 Brassica carinata HOM05D007541 ORTHO05D009404 6.7e-14 80.9 67 59.7
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 6.7e-14 80.9 65 63.1
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 6.7e-14 80.9 65 63.1
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 8.8e-14 80.5 104 49.0
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 3.3e-13 78.6 104 48.1
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 4.4e-13 78.2 100 46.0
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 5.7e-13 77.8 103 46.6
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 2.8e-12 75.5 99 47.5
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 1.4e-11 73.2 90 50.0
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 7.0e-11 70.9 58 58.6
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 1.2e-10 70.1 58 58.6
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 1.6e-10 69.7 62 59.7
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 2.0e-10 69.3 96 43.8
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 2.0e-10 69.3 104 40.4
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 3.5e-10 68.6 68 52.9
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 4.5e-10 68.2 85 49.4
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 7.7e-10 67.4 63 55.6
VMungo1215G1351 Vigna mungo HOM05D007541 ORTHO05D009404 7.7e-10 67.4 60 55.0
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 1.3e-09 66.6 63 55.6
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 1.7e-09 66.2 60 55.0
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 1.7e-09 66.2 58 56.9
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 1.7e-09 66.2 58 56.9
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 1.7e-09 66.2 94 46.8
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 2.2e-09 65.9 103 43.7
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 2.2e-09 65.9 75 50.7
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 2.9e-09 65.5 66 51.5
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 3.8e-09 65.1 94 45.7
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 5.0e-09 64.7 60 56.7
Sed0024262 Sechium edule HOM05D007541 ORTHO05D009404 5.0e-09 64.7 65 50.8
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 1.5e-08 63.2 101 40.6
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 1.5e-08 63.2 66 50.0
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 1.9e-08 62.8 58 53.4
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 1.9e-08 62.8 100 39.0
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 2.5e-08 62.4 60 55.0
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 2.5e-08 62.4 77 46.8
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 4.2e-08 61.6 103 42.7
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 4.2e-08 61.6 103 42.7
Hma1.2p1_0322F.1_g124880 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 5.5e-08 61.2 46 65.2
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 9.4e-08 60.5 103 41.7
Lalb_Chr04g0255761 Lupinus albus HOM05D007541 ORTHO05D009404 9.4e-08 60.5 57 52.6
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 1.6e-07 59.7 59 49.2
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 1.6e-07 59.7 62 51.6
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 2.7e-07 58.9 58 51.7
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 3.6e-07 58.5 105 41.9
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 6.1e-07 57.8 69 46.4
TWI79G0012 Tripterygium wilfordii HOM05D007541 ORTHO05D009404 8.0e-07 57.4 99 38.4
Gorai.013G091800 Gossypium raimondii HOM05D007541 ORTHO05D009404 1.0e-06 57.0 53 62.3
Ah.03g139100 Amaranthus hybridus HOM05D007541 ORTHO05D009404 1.8e-06 56.2 68 50.0
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 1.8e-06 56.2 101 39.6
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 3.0e-06 55.5 43 65.1
DCAR_027454 Daucus carota HOM05D007541 ORTHO05D009404 4.0e-06 55.1 114 40.4
Potri.010G160600 Populus trichocarpa HOM05D007541 ORTHO05D009404 4.0e-06 55.1 106 37.7


User provided reference genes

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