Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.3e-282 975.7 485 100.0
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.4e-244 848.6 454 91.6
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.5e-233 812.0 489 83.2
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 5.5e-233 810.8 482 83.0
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 5.5e-225 784.3 477 81.1
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.7e-224 781.2 471 80.9
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.3e-223 778.9 471 81.5
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.2e-223 777.7 471 81.5
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.8e-223 777.3 482 79.5
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.2e-221 772.3 471 80.9
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 2.8e-221 771.9 467 80.1
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.8e-220 769.2 471 78.8
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 9.2e-220 766.9 484 77.3
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 9.2e-220 766.9 484 77.3
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 9.2e-220 766.9 484 77.3
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 6.6e-218 760.8 483 77.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.7e-211 738.8 470 76.4
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 2.6e-198 695.7 468 71.4
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 6.4e-197 691.0 465 71.4
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.4e-196 689.1 465 71.2
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 1.6e-195 686.4 468 69.7
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.3e-194 682.6 469 70.4
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 5.1e-194 681.4 474 69.8
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.6e-194 680.6 468 69.9
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.2e-192 676.8 465 70.1
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 2.8e-192 675.6 467 69.6
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 3.6e-192 675.2 469 68.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.4e-191 673.3 468 69.9
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.8e-191 672.9 468 68.6
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.3e-191 672.5 468 68.6
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.1e-191 672.2 468 69.2
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 5.2e-191 671.4 468 69.4
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.2e-190 670.2 468 69.7
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-190 670.2 468 68.8
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 4.4e-190 668.3 468 69.2
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 7.6e-190 667.5 467 68.7
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.3e-189 666.8 465 69.7
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.7e-189 666.4 468 68.2
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 2.9e-189 665.6 465 69.2
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 2.9e-189 665.6 468 69.4
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.8e-189 665.2 469 68.4
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 3.8e-189 665.2 468 67.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 8.4e-189 664.1 467 66.8
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.4e-188 663.3 465 69.0
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.4e-188 663.3 465 68.6
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.9e-188 662.9 477 66.9
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.4e-188 662.5 469 68.7
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.4e-188 662.5 492 66.3
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.2e-188 662.1 468 68.8
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 4.1e-188 661.8 468 68.4
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 9.2e-188 660.6 468 67.9
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 9.2e-188 660.6 468 67.5
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.6e-187 659.8 469 68.7
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.6e-187 659.8 468 67.3
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.6e-187 659.8 468 67.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.1e-187 659.4 488 66.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.1e-187 659.4 471 68.4
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 3.5e-187 658.7 468 67.5
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.5e-187 658.7 468 67.7
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 4.6e-187 658.3 468 67.3
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 7.8e-187 657.5 467 67.0
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.0e-186 657.1 468 67.3
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.7e-186 656.4 465 66.9
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.3e-186 656.0 468 67.5
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 3.9e-186 655.2 468 67.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 3.9e-186 655.2 468 66.5
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 8.6e-186 654.1 470 65.7
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.5e-185 653.3 466 65.5
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.5e-185 653.3 471 67.7
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.9e-185 652.9 477 67.5
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.9e-185 652.9 467 66.8
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.9e-185 652.9 471 66.9
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.3e-185 652.1 473 66.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.3e-185 651.7 470 67.2
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 5.6e-185 651.4 468 67.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 5.6e-185 651.4 469 66.7
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 5.6e-185 651.4 488 66.0
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.1e-184 649.4 465 68.0
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 6.2e-184 647.9 467 68.5
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.1e-183 647.1 468 68.2
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 3.1e-183 645.6 467 67.2
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 9.0e-183 644.0 467 66.0
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.2e-182 643.7 469 65.9
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 1.5e-182 643.3 468 66.7
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.4e-182 642.1 442 70.8
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 4.9e-181 638.3 467 64.9
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.2e-179 633.6 444 69.8
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.5e-179 632.1 472 63.6
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 8.7e-178 627.5 468 63.7
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.5e-177 625.9 444 67.3
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.3e-177 624.4 444 67.6
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.1e-175 620.5 471 65.6
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 3.4e-174 615.5 467 65.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 5.8e-174 614.8 468 61.5
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.7e-173 613.2 444 67.1
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 6.4e-173 611.3 445 65.2
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.2e-171 607.1 444 66.4
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.9e-169 599.7 470 61.7
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.3e-169 599.0 475 61.3
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.6e-169 598.2 465 63.7
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.3e-168 597.0 476 60.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.6e-168 596.7 468 62.6
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.8e-168 595.9 463 62.6
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.9e-164 583.2 465 64.5
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.8e-162 576.6 477 61.0
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.5e-161 573.5 480 62.7
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.5e-161 572.8 409 68.2
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.8e-152 542.7 387 68.0
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 4.8e-152 542.0 379 68.6
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.2e-148 528.9 477 59.1
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 5.5e-148 528.5 444 59.5
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 4.8e-144 515.4 463 52.5
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 2.4e-143 513.1 472 52.5
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 4.7e-139 498.8 458 52.8
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 7.4e-137 491.5 467 52.9
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.9e-132 476.9 471 48.0
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.0e-130 471.1 330 68.5
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 5.9e-126 455.3 344 63.1
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 2.2e-125 453.4 347 64.0
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 2.2e-125 453.4 319 69.0
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.8e-117 426.0 475 46.7
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.0e-114 416.0 293 68.3
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.0e-113 413.7 293 68.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 3.5e-110 402.9 382 53.7
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 4.5e-102 375.9 274 66.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 7.8e-94 348.6 543 39.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 1.9e-92 344.0 611 35.5
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 8.9e-90 335.1 253 64.8
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 3.2e-79 300.1 452 39.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 6.6e-77 292.4 468 38.7
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.9e-54 215.7 157 64.3
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.5e-46 190.3 244 43.9
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 9.6e-44 182.2 205 49.3
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.5e-36 157.5 309 34.0
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.8e-32 143.7 108 67.6
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 7.2e-31 139.4 118 55.1
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 5.1e-29 133.3 133 53.4
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.5e-28 131.0 242 37.6
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.3e-27 128.6 87 64.4
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.4e-26 124.4 75 77.3
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 8.5e-24 115.9 82 72.0
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 8.2e-19 99.4 68 73.5
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.4e-15 88.6 63 65.1
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 7.4e-12 76.3 92 48.9


User provided reference genes

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