Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.4e-52 208.8 119 100.0
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.1e-44 183.3 122 81.1
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 8.1e-37 157.1 112 74.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 6.5e-34 147.5 113 71.7
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-32 143.3 113 69.9
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 1.2e-32 143.3 113 69.9
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 1.0e-31 140.2 125 65.6
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 7.4e-30 134.0 114 64.9
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.6e-29 132.9 114 72.8
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 5.8e-27 124.4 114 71.9
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 8.4e-26 120.6 115 72.2
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.3e-18 96.7 111 52.3
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.1e-16 89.4 118 46.6
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 2.1e-16 89.4 125 51.2
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 7.9e-16 87.4 117 47.9
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.8e-15 86.3 115 46.1
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.0e-15 85.5 119 45.4
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.9e-15 85.1 114 46.5
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 6.7e-15 84.3 112 46.4
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.1e-14 83.6 120 40.8
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 5.7e-14 81.3 122 42.6
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 9.7e-14 80.5 130 40.8
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 9.7e-14 80.5 115 43.5
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.3e-13 80.1 121 43.8
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.2e-13 79.3 110 42.7
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 3.7e-13 78.6 110 41.8
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 3.7e-13 78.6 114 45.6
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.3e-13 77.8 128 43.0
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 6.3e-13 77.8 124 41.9
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.1e-12 77.0 111 45.0
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.4e-12 76.6 130 40.0
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 2.4e-12 75.9 112 44.6
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 4.1e-12 75.1 112 45.5
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 5.3e-12 74.7 115 43.5
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 6.9e-12 74.3 134 41.0
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 6.9e-12 74.3 117 44.4
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 9.1e-12 73.9 114 43.0
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 9.1e-12 73.9 113 44.2
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.2e-11 73.6 77 51.9
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.5e-11 73.2 121 40.5
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.5e-11 73.2 115 41.7
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.0e-11 72.8 112 42.0
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.6e-11 72.4 107 43.9
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 2.6e-11 72.4 108 38.9
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.4e-11 72.0 113 40.7
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 4.5e-11 71.6 108 44.4
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.7e-11 70.9 57 59.6
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 7.7e-11 70.9 113 38.9
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.7e-11 70.9 113 38.9
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.0e-10 70.5 113 38.1
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.0e-10 70.5 113 38.1
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-10 70.1 122 39.3
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-10 70.1 122 41.0
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 3.8e-10 68.6 115 40.9
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.8e-10 68.6 114 42.1
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 5.0e-10 68.2 61 59.0
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.0e-10 68.2 122 40.2
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 6.5e-10 67.8 112 40.2
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 6.5e-10 67.8 107 42.1
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.1e-09 67.0 61 57.4
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 1.1e-09 67.0 61 57.4
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.1e-09 67.0 61 57.4
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.1e-09 67.0 114 42.1
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-09 66.6 114 41.2
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.4e-09 66.6 69 56.5
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.5e-09 65.9 120 40.0
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 2.5e-09 65.9 129 40.3
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.2e-09 65.5 51 66.7
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.2e-09 65.5 120 40.0
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 4.2e-09 65.1 61 54.1
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 4.2e-09 65.1 112 39.3
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 4.2e-09 65.1 117 43.6
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 5.5e-09 64.7 67 56.7
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 5.5e-09 64.7 111 40.5
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 7.2e-09 64.3 107 42.1
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.2e-09 64.3 100 40.0
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 7.2e-09 64.3 114 37.7
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 7.2e-09 64.3 122 35.2
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 1.2e-08 63.5 107 38.3
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.6e-08 63.2 58 55.2
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 1.6e-08 63.2 100 44.0
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.1e-08 62.8 115 38.3
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.1e-08 62.8 114 39.5
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.7e-08 62.4 107 42.1
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.7e-08 62.4 74 51.4
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.6e-08 62.0 115 40.9
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 4.7e-08 61.6 60 56.7
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.7e-08 61.6 115 39.1
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 4.7e-08 61.6 75 52.0
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.1e-08 61.2 67 53.7
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.0e-07 60.5 55 54.5
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.0e-07 60.5 57 57.9
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.0e-07 60.5 124 36.3
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.4e-07 60.1 116 39.7
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.4e-07 60.1 118 36.4
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.4e-07 60.1 107 38.3
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.8e-07 59.7 101 39.6
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 1.8e-07 59.7 118 37.3
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.3e-07 59.3 67 52.2
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.3e-07 59.3 67 52.2
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.3e-07 59.3 112 39.3
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 3.9e-07 58.5 115 39.1
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 3.9e-07 58.5 56 55.4
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 5.1e-07 58.2 124 37.9
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.1e-07 58.2 56 55.4
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 6.7e-07 57.8 70 51.4
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 8.8e-07 57.4 118 39.8
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.1e-06 57.0 62 51.6
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-06 56.6 59 47.5
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 3.3e-06 55.5 125 35.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 3.3e-06 55.5 118 38.1
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 4.4e-06 55.1 123 37.4
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 7.4e-06 54.3 67 50.7


User provided reference genes

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