Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68585 Arabidopsis thaliana HOM05D006290 ORTHO05D007734 1.9e-54 215.7 117 100.0
AL2G27490 Arabidopsis lyrata HOM05D006290 ORTHO05D007734 6.7e-52 207.2 116 96.6
Carub.0002s1512 Capsella rubella HOM05D006290 ORTHO05D007734 5.7e-51 204.1 115 95.7
Thhalv10019326m.g Eutrema salsugineum HOM05D006290 ORTHO05D007734 8.8e-44 180.3 116 84.5
BcaB03g15431 Brassica carinata HOM05D006290 ORTHO05D007734 2.6e-43 178.7 117 86.3
CARHR061380 Cardamine hirsuta HOM05D006290 ORTHO05D007734 1.7e-42 176.0 117 82.1
BcaC08g45955 Brassica carinata HOM05D006290 ORTHO05D007734 2.2e-42 175.6 116 82.8
Sp5g23690 Schrenkiella parvula HOM05D006290 ORTHO05D007734 2.8e-42 175.3 117 85.5
BcaC03g14971 Brassica carinata HOM05D006290 ORTHO05D007734 6.3e-42 174.1 117 82.1
C06p37490 Brassica napus HOM05D006290 ORTHO05D007734 2.4e-41 172.2 117 82.9
BolC6t38851H Brassica oleracea HOM05D006290 ORTHO05D007734 2.4e-41 172.2 117 82.9
BraA07t30820Z Brassica rapa HOM05D006290 ORTHO05D007734 2.4e-41 172.2 117 82.9
C02p25020 Brassica napus HOM05D006290 ORTHO05D007734 3.1e-41 171.8 118 82.2
A07p31920 Brassica napus HOM05D006290 ORTHO05D007734 7.0e-41 170.6 117 82.1
BraA02t06584Z Brassica rapa HOM05D006290 ORTHO05D007734 7.0e-41 170.6 118 82.2
BolC2t08586H Brassica oleracea HOM05D006290 ORTHO05D007734 1.6e-40 169.5 118 81.4
A02p15210 Brassica napus HOM05D006290 ORTHO05D007734 2.0e-40 169.1 118 81.4
BcaB05g24400 Brassica carinata HOM05D006290 ORTHO05D007734 5.9e-40 167.5 111 83.8
THA.LOC104821947 Tarenaya hassleriana HOM05D006290 ORTHO05D007734 1.8e-33 146.0 112 72.3
Aa31sc179G60 Aethionema arabicum HOM05D006290 ORTHO05D007734 2.4e-33 145.6 105 76.2
Atru.chr11.1291 Acer truncatum HOM05D006290 ORTHO05D007734 3.1e-20 102.1 97 60.8
Haze_17464 Corylus avellana HOM05D006290 ORTHO05D007734 2.6e-19 99.0 103 55.3
QL01p043858 Quercus lobata HOM05D006290 ORTHO05D007734 4.4e-19 98.2 103 53.4
Cfa018610 Carpinus fangiana HOM05D006290 ORTHO05D007734 2.2e-18 95.9 103 54.4
BcaC08g45952 Brassica carinata HOM05D006290 ORTHO05D007734 2.9e-18 95.5 59 89.8
C06p41250 Brassica napus HOM05D006290 ORTHO05D007734 6.4e-18 94.4 61 83.6
CiPaw.15G083600 Carya illinoinensis HOM05D006290 ORTHO05D007734 9.2e-17 90.5 121 44.6
Thecc.02G357300 Theobroma cacao HOM05D006290 ORTHO05D007734 9.2e-17 90.5 94 55.3
Potri.008G119300 Populus trichocarpa HOM05D006290 ORTHO05D007734 1.2e-16 90.1 90 57.8
Sabra10G0096300 Salix brachista HOM05D006290 ORTHO05D007734 1.6e-16 89.7 73 64.4
Eucgr.G02333 Eucalyptus grandis HOM05D006290 ORTHO05D007734 3.5e-16 88.6 96 55.2
Manes.14G100600 Manihot esculenta HOM05D006290 ORTHO05D007734 4.6e-16 88.2 88 55.7
Potri.010G126800 Populus trichocarpa HOM05D006290 ORTHO05D007734 4.6e-16 88.2 103 52.4
Duzib251G0521 Durio zibethinus HOM05D006290 ORTHO05D007734 1.0e-15 87.0 95 54.7
TWI75G0318 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 1.3e-15 86.7 76 61.8
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 3.0e-15 85.5 101 50.5
Gohir.A13G054000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 8.6e-15 84.0 90 50.0
Gohir.D13G071500 Gossypium hirsutum HOM05D006290 ORTHO05D007734 8.6e-15 84.0 90 50.0
Gorai.013G081900 Gossypium raimondii HOM05D006290 ORTHO05D007734 8.6e-15 84.0 90 50.0
CANSAT64G2445 Cannabis sativa HOM05D006290 ORTHO05D007734 1.1e-14 83.6 60 66.7
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.1e-14 83.6 105 49.5
MD13G1043600 Malus domestica HOM05D006290 ORTHO05D007734 1.9e-14 82.8 95 48.4
TWI79G1749 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 2.5e-14 82.4 76 60.5
Hma1.2p1_3293F.1_g334960 Hydrangea macrophylla HOM05D006290 ORTHO05D007734 4.3e-14 81.6 101 49.5
Psat6g229000 Pisum sativum HOM05D006290 ORTHO05D007734 9.5e-14 80.5 103 43.7
Gohir.A12G168000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 1.2e-13 80.1 66 60.6
Gohir.D12G171600 Gossypium hirsutum HOM05D006290 ORTHO05D007734 1.2e-13 80.1 66 60.6
Phvul.003G034800 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 1.6e-13 79.7 95 49.5
Oeu033294.1 Olea europaea HOM05D006290 ORTHO05D007734 2.1e-13 79.3 87 48.3
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 4.7e-13 78.2 76 56.6
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 6.2e-13 77.8 70 58.6
GSVIVG01011914001 Vitis vinifera HOM05D006290 ORTHO05D007734 8.1e-13 77.4 98 48.0
Glyma.01G082500 Glycine max HOM05D006290 ORTHO05D007734 1.8e-12 76.3 97 47.4
Gorai.008G184100 Gossypium raimondii HOM05D006290 ORTHO05D007734 1.8e-12 76.3 67 59.7
SGA_v2.0_scaffold124G33547 Striga asiatica HOM05D006290 ORTHO05D007734 1.8e-12 76.3 60 65.0
MSTRG.826 Avicennia marina HOM05D006290 ORTHO05D007734 3.1e-12 75.5 87 47.1
FvH4_4g27620 Fragaria vesca HOM05D006290 ORTHO05D007734 3.1e-12 75.5 93 46.2
Nitab4.5_0001914g0020 Nicotiana tabacum HOM05D006290 ORTHO05D007734 3.1e-12 75.5 76 53.9
EL10Ac6g14437 Beta vulgaris HOM05D006290 ORTHO05D007734 4.0e-12 75.1 92 41.3
vmacro10549 Vaccinium macrocarpon HOM05D006290 ORTHO05D007734 4.0e-12 75.1 61 67.2
Medtr1g111150 Medicago truncatula HOM05D006290 ORTHO05D007734 5.2e-12 74.7 114 44.7
PGR119G1521 Punica granatum HOM05D006290 ORTHO05D007734 5.2e-12 74.7 67 56.7
Lj2g0005219 Lotus japonicus HOM05D006290 ORTHO05D007734 6.8e-12 74.3 95 44.2
Lj5g0001389 Lotus japonicus HOM05D006290 ORTHO05D007734 6.8e-12 74.3 111 45.9
Duzib268G1644 Durio zibethinus HOM05D006290 ORTHO05D007734 8.9e-12 73.9 75 58.7
Phvul.007G026200 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 8.9e-12 73.9 59 61.0
Actinidia16641 Actinidia chinensis HOM05D006290 ORTHO05D007734 1.2e-11 73.6 68 61.8
ClCG05G022830 Citrullus lanatus HOM05D006290 ORTHO05D007734 1.2e-11 73.6 84 50.0
Peaxi162Scf00004g01813 Petunia axillaris HOM05D006290 ORTHO05D007734 1.5e-11 73.2 75 54.7
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.5e-11 73.2 77 54.5
Glyma.10G275300 Glycine max HOM05D006290 ORTHO05D007734 2.0e-11 72.8 65 58.5
Lalb_Chr21g0309011 Lupinus albus HOM05D006290 ORTHO05D007734 2.0e-11 72.8 57 63.2
Sc14g0007550 Simmondsia chinensis HOM05D006290 ORTHO05D007734 2.6e-11 72.4 92 46.7
Ciclev10033212m.g Citrus clementina HOM05D006290 ORTHO05D007734 3.4e-11 72.0 50 68.0
DCAR_023668 Daucus carota HOM05D000325 ORTHO05D002981 3.4e-11 72.0 71 54.9
Glyma.08G263700 Glycine max HOM05D006290 ORTHO05D007734 3.4e-11 72.0 97 46.4
Manes.06G069950 Manihot esculenta HOM05D006290 ORTHO05D007734 3.4e-11 72.0 75 52.0
DCAR_007237 Daucus carota HOM05D006290 ORTHO05D007734 4.4e-11 71.6 88 53.4
Glyma.20G114400 Glycine max HOM05D006290 ORTHO05D007734 4.4e-11 71.6 59 57.6
MSTRG.13517 Avicennia marina HOM05D006290 ORTHO05D007734 5.8e-11 71.2 61 57.4
arahy.Tifrunner.gnm1.ann1.89WS3K Arachis hypogaea HOM05D006290 ORTHO05D007734 7.5e-11 70.9 66 62.1
TPR.G38332 Trifolium pratense HOM05D006290 ORTHO05D007734 7.5e-11 70.9 58 63.8
Migut.L01076 Erythranthe guttata HOM05D006290 ORTHO05D007734 9.9e-11 70.5 94 45.7
Nitab4.5_0003285g0030 Nicotiana tabacum HOM05D006290 ORTHO05D007734 9.9e-11 70.5 100 41.0
Hund05756 Selenicereus undatus HOM05D006290 ORTHO05D007734 9.9e-11 70.5 97 39.2
arahy.Tifrunner.gnm1.ann1.N6V5UD Arachis hypogaea HOM05D006290 ORTHO05D007734 1.3e-10 70.1 66 62.1
Ca_11183_v3 Cicer arietinum L. HOM05D006290 ORTHO05D007734 1.3e-10 70.1 75 56.0
Lalb_Chr10g0099941 Lupinus albus HOM05D006290 ORTHO05D007734 1.3e-10 70.1 83 50.6
Sed0010442 Sechium edule HOM05D006290 ORTHO05D007734 1.7e-10 69.7 84 46.4
TPR.G26319 Trifolium pratense HOM05D006290 ORTHO05D007734 1.7e-10 69.7 96 45.8
AUR62002889 Chenopodium quinoa HOM05D006290 ORTHO05D007734 2.2e-10 69.3 59 52.5
CsaV3_5G034200 Cucumis sativus L. HOM05D006290 ORTHO05D007734 3.7e-10 68.6 94 43.6
Aqoxy3G00325 Aquilegia oxysepala HOM05D006290 ORTHO05D007734 6.4e-10 67.8 71 54.9
Lalb_Chr17g0342051 Lupinus albus HOM05D006290 ORTHO05D007734 8.3e-10 67.4 92 47.8
Medtr5g055200 Medicago truncatula HOM05D006290 ORTHO05D007734 8.3e-10 67.4 58 62.1
Oeu020586.1 Olea europaea HOM05D006290 ORTHO05D007734 1.1e-09 67.0 72 52.8
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 3.2e-09 65.5 60 55.0
CiPaw.16G064000 Carya illinoinensis HOM05D006290 ORTHO05D007734 5.4e-09 64.7 41 75.6
Nn4g23807 Nelumbo nucifera HOM05D006290 ORTHO05D007734 5.4e-09 64.7 73 46.6
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.2e-08 63.5 62 56.5
HanXRQChr17g0567961 Helianthus annuus HOM05D006290 ORTHO05D007734 1.2e-08 63.5 85 45.9
FAN12G1280 Fragaria x ananassa HOM05D006290 ORTHO05D007734 2.1e-08 62.8 118 36.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-08 62.4 130 34.6
HanXRQChr16g0529651 Helianthus annuus HOM05D006290 ORTHO05D007734 4.6e-08 61.6 122 35.2
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.0e-08 61.2 130 33.8
Lsat_1_v5_gn_4_18480 Lactuca sativa HOM05D006290 ORTHO05D007734 6.0e-08 61.2 95 43.2
unitig_26.g10264 Utricularia gibba HOM05D000483 ORTHO05D000158 1.0e-07 60.5 82 45.1
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.3e-07 60.1 57 50.9
ECA234G1725 Erigeron canadensis HOM05D006290 ORTHO05D007734 1.7e-07 59.7 83 48.2
MD16G1044400 Malus domestica HOM05D006290 ORTHO05D007734 1.5e-06 56.6 39 66.7
Solyc05g150121.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 1.5e-06 56.6 73 50.7
MBI12_g30235_MAGBIO Magnolia biondii HOM05D006290 ORTHO05D007734 1.9e-06 56.2 65 49.2
CAN.G257.59 Capsicum annuum HOM05D006290 ORTHO05D007734 3.3e-06 55.5 69 42.0
MELO3C012234.2 Cucumis melo HOM05D006290 ORTHO05D007734 3.3e-06 55.5 39 64.1
Sed0022191 Sechium edule HOM05D006290 ORTHO05D007734 4.3e-06 55.1 72 41.7
Solyc12g150113.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 5.6e-06 54.7 81 40.7
Sopen12g017530 Solanum pennellii HOM05D006290 ORTHO05D007734 5.6e-06 54.7 81 40.7
PGSC0003DMG400021769 Solanum tuberosum HOM05D006290 ORTHO05D007734 7.3e-06 54.3 81 40.7
HanXRQChr15g0477181 Helianthus annuus HOM05D006290 ORTHO05D007734 9.5e-06 53.9 114 36.8
HanXRQChr17g0552191 Helianthus annuus HOM05D006290 ORTHO05D007734 9.5e-06 53.9 83 44.6
Peaxi162Scf00634g00115 Petunia axillaris HOM05D006290 ORTHO05D007734 9.5e-06 53.9 73 41.1


User provided reference genes

Program Settings