Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.1e-139 500.0 254 100.0
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.8e-133 477.6 254 96.5
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 4.9e-124 448.0 255 91.8
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.3e-115 417.2 257 83.3
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.7e-114 415.6 258 82.6
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.3e-111 404.4 257 84.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.4e-110 402.5 255 81.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.4e-110 402.5 255 81.6
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-109 400.2 254 81.5
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.5e-109 398.3 255 80.8
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 6.1e-106 387.9 254 79.9
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 5.5e-99 364.8 255 77.3
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.5e-96 355.9 253 75.9
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-94 350.5 254 74.8
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.4e-78 297.0 272 63.2
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 4.7e-58 228.8 181 70.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.4e-57 227.3 266 55.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.0e-54 214.9 240 52.5
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.7e-47 193.7 275 48.4
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 7.8e-45 184.9 284 48.2
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.3e-44 183.3 286 46.9
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.9e-44 182.6 268 49.6
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.0e-44 182.2 269 50.2
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.5e-43 179.9 268 48.9
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 7.3e-43 178.3 249 48.2
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.1e-42 176.8 279 49.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-41 174.5 279 48.4
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-41 174.5 279 48.4
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.3e-41 173.3 264 45.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 5.2e-41 172.2 272 45.2
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 6.8e-41 171.8 278 46.8
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.2e-40 171.0 278 45.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 2.6e-40 169.9 253 47.8
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 9.8e-40 167.9 307 42.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.7e-39 167.2 294 43.9
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.2e-39 166.8 261 46.0
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.2e-39 166.8 272 44.5
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.2e-39 166.8 272 45.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 6.4e-39 165.2 283 44.2
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 6.4e-39 165.2 244 45.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-38 164.5 270 43.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.1e-38 164.5 289 46.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 4.1e-38 162.5 235 46.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 7.1e-38 161.8 300 44.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 9.2e-38 161.4 232 48.7
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.5e-37 159.5 271 42.4
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.3e-36 157.5 208 47.1
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 3.0e-36 156.4 230 46.5
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.5e-35 154.1 232 50.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.5e-35 153.3 228 47.4
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 4.3e-35 152.5 229 52.0
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 5.6e-35 152.1 222 46.4
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 7.3e-35 151.8 272 44.1
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.2e-34 151.0 249 48.6
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.6e-34 150.6 299 40.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.1e-34 150.2 296 40.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.6e-34 149.4 294 43.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 8.1e-34 148.3 227 45.4
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-33 147.9 274 42.3
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.8e-33 147.1 292 41.4
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.3e-33 146.7 229 45.9
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 6.8e-33 145.2 210 47.1
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.5e-32 144.1 159 56.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.0e-32 143.7 262 45.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.6e-32 143.3 292 38.4
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 7.6e-32 141.7 223 46.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 9.9e-32 141.4 236 44.5
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.8e-31 139.4 275 40.7
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 3.8e-31 139.4 303 40.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.9e-31 139.0 214 47.7
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 6.4e-31 138.7 242 42.6
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 6.4e-31 138.7 232 42.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 8.4e-31 138.3 242 44.6
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 8.4e-31 138.3 238 43.7
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.9e-30 137.1 226 42.9
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.9e-30 137.1 244 44.7
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.2e-30 136.3 243 43.6
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 3.2e-30 136.3 245 41.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 4.1e-30 136.0 239 42.7
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 5.4e-30 135.6 277 38.6
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 7.1e-30 135.2 279 39.4
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.1e-30 135.2 208 47.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.5e-29 132.9 250 39.6
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.0e-28 131.3 221 41.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.7e-28 130.6 275 38.9
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.7e-28 130.6 275 38.9
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.3e-28 130.2 240 41.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 3.0e-28 129.8 244 42.6
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.1e-28 129.0 99 69.7
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.6e-28 128.6 137 56.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.1e-27 127.9 209 43.5
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.1e-27 127.9 127 59.8
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.5e-27 127.5 241 42.3
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.9e-27 127.1 206 42.2
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.3e-27 125.9 192 44.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 5.6e-27 125.6 210 44.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.3e-27 125.2 282 37.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-26 124.0 183 47.5
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.2e-26 122.1 213 41.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 8.1e-26 121.7 93 71.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.4e-25 120.9 233 41.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 4.0e-25 119.4 97 64.9
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.2e-24 117.9 229 43.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 5.8e-24 115.5 181 46.4
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.6e-24 115.2 142 52.8
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.9e-24 114.8 101 62.4
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-23 114.4 195 39.5
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 4.9e-23 112.5 83 72.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 4.9e-23 112.5 127 55.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.4e-23 112.1 211 40.8
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-22 110.9 203 44.3
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.9e-22 110.5 104 58.7
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 5.4e-22 109.0 220 42.7
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.6e-21 107.5 75 74.7
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.1e-21 107.1 140 49.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.1e-21 107.1 151 53.0
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.1e-21 107.1 237 42.6
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.1e-21 107.1 101 63.4
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 3.5e-21 106.3 99 58.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.6e-21 105.9 98 64.3
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-20 104.0 235 42.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 3.9e-20 102.8 234 38.5
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-19 100.9 231 42.9
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 2.5e-19 100.1 237 38.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.3e-18 97.8 243 36.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.3e-18 97.8 100 57.0
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-18 97.4 211 41.2
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.6e-18 97.4 211 41.2
BcaC03g14956 Brassica carinata HOM05D004123 ORTHO05D004768 4.0e-17 92.8 68 72.1
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.6e-16 90.1 216 38.4
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.4e-14 84.3 226 34.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 2.7e-13 80.1 215 34.9
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.5e-11 74.3 232 37.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.5e-11 73.6 265 32.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-10 70.1 76 50.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.8e-10 70.1 57 61.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.6e-10 69.7 54 63.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.8e-09 67.4 215 35.8
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 4.0e-09 66.2 227 31.7
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 9.0e-09 65.1 69 50.7
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 9.0e-09 65.1 158 44.3
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.2e-08 64.7 182 34.1
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 4.5e-08 62.8 65 53.8
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.6e-08 62.0 63 50.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 7.6e-08 62.0 221 33.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.9e-07 60.1 202 28.7
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.8e-07 59.7 156 31.4
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 4.9e-07 59.3 211 34.1
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 8.4e-07 58.5 264 32.2
Lalb_Chr01g0022461 Lupinus albus HOM05D000333 ORTHO05D000190 8.4e-07 58.5 86 39.5
Rhsim01G0123100 Rhododendron simsii HOM05D000333 ORTHO05D000190 7.1e-06 55.5 103 35.0
DCAR_024520 Daucus carota HOM05D001250 ORTHO05D000627 9.3e-06 55.1 123 35.8


User provided reference genes

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