Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.0e-167 592.4 307 100.0
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.7e-142 508.4 309 89.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.6e-124 449.9 320 81.9
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-119 433.3 314 77.1
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.0e-119 433.0 315 74.0
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.6e-119 432.6 315 77.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 8.3e-118 427.6 312 77.2
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 8.3e-118 427.6 312 77.2
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.9e-117 426.4 312 76.0
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.9e-117 426.4 312 76.0
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.6e-116 423.3 312 75.6
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 7.3e-114 414.5 315 73.7
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-113 413.3 313 74.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.7e-113 411.8 316 74.1
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 4.7e-113 411.8 314 73.9
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 4.0e-112 408.7 315 73.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.4e-109 400.2 314 72.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.1e-104 384.0 316 69.9
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.3e-89 334.0 305 62.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 6.5e-78 295.0 301 58.1
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 8.4e-78 294.7 300 59.3
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.5e-76 289.3 300 56.0
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.5e-76 289.3 299 57.5
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.8e-75 287.0 301 56.8
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 4.8e-73 278.9 304 55.6
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 4.8e-73 278.9 304 55.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 4.8e-73 278.9 304 55.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 6.9e-72 275.0 301 54.5
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.2e-69 266.2 304 55.6
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 9.7e-66 254.6 293 57.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.8e-57 226.5 300 46.7
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 8.8e-51 204.9 298 48.7
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.7e-49 200.7 332 41.9
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.7e-49 199.5 328 43.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.1e-48 198.0 336 43.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-48 197.2 331 39.6
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 4.1e-48 196.1 338 41.1
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.0e-48 195.3 330 40.3
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.0e-46 191.4 328 39.6
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.9e-46 189.9 345 42.0
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.0e-46 189.1 323 40.6
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 5.5e-45 185.7 335 42.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.2e-42 177.9 333 41.1
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.0e-42 177.2 323 36.8
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 7.5e-42 175.3 328 40.2
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.4e-40 170.2 311 39.5
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.4e-40 170.2 318 40.6
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.5e-39 166.4 335 34.9
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 5.9e-39 165.6 309 40.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.3e-38 164.5 326 35.0
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.9e-38 163.3 312 36.5
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.8e-38 162.9 327 38.5
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.2e-37 158.7 322 33.5
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 9.4e-37 158.3 310 34.8
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 4.0e-35 152.9 317 35.0
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 8.8e-35 151.8 321 34.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.0e-34 150.6 343 38.5
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.7e-33 147.5 326 39.3
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.8e-33 146.7 319 34.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 4.8e-33 146.0 314 36.9
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.3e-33 145.6 324 33.0
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 6.3e-33 145.6 323 31.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.1e-32 144.8 330 31.5
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.1e-32 144.8 334 33.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.8e-32 144.1 327 38.2
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.1e-32 143.3 308 38.6
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.1e-32 142.9 324 32.4
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.0e-32 142.1 316 37.3
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.0e-32 142.1 330 38.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.1e-32 141.7 316 37.3
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.7e-31 140.2 329 36.2
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 3.5e-31 139.8 302 37.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.5e-31 139.4 319 37.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 5.9e-31 139.0 326 36.8
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 7.7e-31 138.7 338 32.2
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.0e-30 138.3 330 35.5
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.7e-30 137.5 331 32.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.7e-30 137.5 304 35.2
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.8e-30 136.3 313 36.7
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 8.5e-30 135.2 334 34.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.5e-30 135.2 334 33.5
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.1e-29 134.8 334 31.1
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.1e-29 134.8 321 38.6
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.5e-29 134.4 337 34.1
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.9e-29 134.0 332 31.9
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.9e-29 134.0 316 37.3
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.5e-29 133.7 338 34.9
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.5e-29 133.7 324 36.4
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 7.2e-29 132.1 327 35.5
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 9.5e-29 131.7 328 36.9
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 9.5e-29 131.7 328 35.4
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.6e-28 131.0 319 31.3
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.6e-28 131.0 335 34.6
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.6e-28 131.0 310 31.6
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.1e-28 130.6 330 29.4
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.1e-28 130.6 334 35.6
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.1e-28 130.6 336 35.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.7e-28 129.4 332 31.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 6.1e-28 129.0 332 34.0
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-27 127.5 334 35.3
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 6.8e-27 125.6 331 34.1
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 6.8e-27 125.6 312 34.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.8e-27 125.2 283 35.3
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.4e-26 123.2 323 31.0
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 5.7e-26 122.5 330 36.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 9.8e-26 121.7 320 36.2
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 2.8e-25 120.2 194 43.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.7e-25 119.8 304 31.6
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.3e-25 118.6 323 35.6
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.8e-24 117.5 329 34.3
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 2.4e-24 117.1 330 28.5
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 5.4e-24 115.9 310 34.5
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-23 114.4 312 29.2
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.7e-23 113.6 304 34.2
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.9e-23 112.5 291 30.6
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.9e-21 107.5 330 29.4
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.8e-20 103.6 291 29.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.0e-19 101.7 300 29.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 5.2e-19 99.4 300 28.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 6.8e-19 99.0 311 32.8
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.8e-19 99.0 302 28.1
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.2e-18 98.2 243 33.3
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.5e-18 97.8 323 28.2
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.5e-18 97.8 324 31.5
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.4e-18 96.7 324 30.2
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 6.4e-17 92.4 310 29.0
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 6.4e-17 92.4 326 29.4
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.8e-16 90.9 310 34.5
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 4.1e-16 89.7 188 36.7
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.6e-15 87.8 326 33.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.9e-15 85.9 174 33.3
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 2.3e-14 84.0 329 29.5
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 8.6e-14 82.0 286 30.4
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 5.6e-13 79.3 284 29.6
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.6e-12 77.8 288 30.9
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.8e-12 77.0 265 30.9
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 2.8e-12 77.0 268 33.2
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.4e-11 74.7 307 30.3
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 2.3e-11 73.9 269 34.9
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.2e-11 72.8 104 42.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.0e-10 70.9 294 29.3
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 5.8e-10 69.3 304 25.7
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 9.8e-10 68.6 250 33.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.7e-09 66.6 232 27.2
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.1e-08 65.1 179 30.2
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.4e-08 63.9 152 27.6
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 4.6e-07 59.7 159 27.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 6.0e-07 59.3 201 32.3


User provided reference genes

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