Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 1.8e-54 216.1 147 100.0
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.1e-48 196.8 147 80.3
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 7.7e-45 184.1 152 76.3
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.7e-42 174.9 151 68.2
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.0e-41 173.7 152 71.1
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 1.5e-40 169.9 147 70.1
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 9.7e-40 167.2 151 67.5
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 3.1e-38 162.2 147 68.7
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 4.1e-38 161.8 151 66.2
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 1.2e-37 160.2 148 68.9
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 1.2e-37 160.2 148 68.9
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 1.6e-37 159.8 151 65.6
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 5.9e-37 157.9 148 68.2
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 7.7e-37 157.5 151 64.9
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 7.7e-37 157.5 151 64.9
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 1.0e-36 157.1 148 68.2
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 1.0e-36 157.1 148 68.2
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 1.5e-35 153.3 151 66.9
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 4.7e-34 148.3 151 61.6
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 4.0e-33 145.2 151 60.9
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 4.0e-33 145.2 151 60.9
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 3.7e-31 138.7 153 58.8
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 3.7e-31 138.7 153 58.8
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 3.7e-31 138.7 153 58.8
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 6.1e-26 121.3 165 50.9
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 6.3e-23 111.3 160 48.8
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 7.5e-16 87.8 167 43.1
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 2.2e-15 86.3 171 42.1
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 1.1e-14 84.0 165 44.2
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 2.4e-14 82.8 166 39.2
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 2.4e-14 82.8 166 39.2
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 3.1e-14 82.4 165 42.4
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.1e-14 82.4 157 42.7
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 1.2e-13 80.5 168 40.5
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.2e-13 80.5 166 38.6
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.6e-13 80.1 157 42.7
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 1.6e-13 80.1 161 38.5
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 2.0e-13 79.7 152 41.4
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 4.5e-13 78.6 159 41.5
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 5.9e-13 78.2 157 41.4
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 2.3e-12 76.3 153 42.5
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 5.0e-12 75.1 163 39.9
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 1.1e-11 73.9 150 42.0
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.1e-11 73.9 150 41.3
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 1.9e-11 73.2 150 39.3
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 3.3e-11 72.4 164 36.6
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 3.3e-11 72.4 151 39.1
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.3e-11 72.0 147 41.5
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 4.3e-11 72.0 150 41.3
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 7.3e-11 71.2 155 42.6
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 3.6e-10 68.9 166 42.8
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 3.6e-10 68.9 157 35.7
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 6.1e-10 68.2 171 36.8
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 8.0e-10 67.8 180 43.3
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.0e-10 67.8 144 39.6
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.0e-10 67.8 148 49.3
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 8.0e-10 67.8 164 36.0
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 1.0e-09 67.4 164 36.0
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 1.0e-09 67.4 158 44.3
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 1.0e-09 67.4 150 40.0
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 1.0e-09 67.4 152 43.4
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 1.8e-09 66.6 174 35.6
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 2.3e-09 66.2 166 34.9
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.3e-09 66.2 154 37.7
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.3e-09 66.2 154 37.7
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 4.0e-09 65.5 160 38.1
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 4.0e-09 65.5 163 35.6
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 5.2e-09 65.1 165 35.8
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 6.8e-09 64.7 177 35.6
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 6.8e-09 64.7 157 43.9
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 6.8e-09 64.7 159 35.8
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 6.8e-09 64.7 166 34.3
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 8.9e-09 64.3 149 38.9
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-08 63.9 161 34.2
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.5e-08 63.5 162 39.5
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 1.5e-08 63.5 159 36.5
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.5e-08 63.5 157 35.7
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 2.6e-08 62.8 161 47.2
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.6e-08 62.8 161 47.2
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 2.6e-08 62.8 163 38.0
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 3.4e-08 62.4 155 36.8
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 3.4e-08 62.4 160 33.8
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 3.4e-08 62.4 162 40.1
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 3.4e-08 62.4 164 34.8
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 3.4e-08 62.4 172 37.8
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 4.4e-08 62.0 151 36.4
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.8e-08 61.6 161 37.3
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 5.8e-08 61.6 158 44.3
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 5.8e-08 61.6 158 44.3
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 7.5e-08 61.2 162 35.2
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.5e-08 61.2 162 33.3
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 7.5e-08 61.2 152 36.8
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 7.5e-08 61.2 164 34.1
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 7.5e-08 61.2 154 36.4
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 7.5e-08 61.2 160 35.6
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.8e-08 60.8 162 32.7
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 9.8e-08 60.8 173 33.5
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.7e-07 60.1 95 45.3
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.7e-07 60.1 162 38.3
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 1.7e-07 60.1 156 35.3
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 1.7e-07 60.1 164 34.8
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 1.7e-07 60.1 154 35.7
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 1.7e-07 60.1 163 34.4
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 2.2e-07 59.7 167 31.7
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 2.9e-07 59.3 172 39.5
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.9e-07 59.3 156 38.5
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 2.9e-07 59.3 173 32.9
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 3.7e-07 58.9 170 35.3
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 3.7e-07 58.9 149 36.9
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 4.9e-07 58.5 157 34.4
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 4.9e-07 58.5 171 35.1
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 4.9e-07 58.5 160 41.2
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 6.4e-07 58.2 171 48.0
Haze_24605 Corylus avellana HOM05D003134 ORTHO05D003500 1.1e-06 57.4 45 68.9
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.1e-06 57.4 162 32.7
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 1.1e-06 57.4 168 31.0
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 1.1e-06 57.4 162 38.3
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 1.1e-06 57.4 163 33.7
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.4e-06 57.0 175 33.7
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 1.4e-06 57.0 172 33.7
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 1.4e-06 57.0 171 39.2
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 1.4e-06 57.0 152 36.2
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 1.4e-06 57.0 149 34.2
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.9e-06 56.6 162 39.5
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.9e-06 56.6 151 41.1
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 1.9e-06 56.6 165 33.9
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.9e-06 56.6 154 34.4
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 2.4e-06 56.2 159 35.2
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 2.4e-06 56.2 47 63.8
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 2.4e-06 56.2 159 34.0
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 2.4e-06 56.2 163 33.7
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 3.2e-06 55.8 157 32.5
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 3.2e-06 55.8 160 38.1
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 3.2e-06 55.8 47 66.0
QL02p050634 Quercus lobata HOM05D003134 ORTHO05D003500 3.2e-06 55.8 47 66.0
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 4.1e-06 55.5 162 37.7
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 4.1e-06 55.5 147 30.6
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 5.4e-06 55.1 172 44.8
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 5.4e-06 55.1 172 44.8
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 5.4e-06 55.1 175 33.1
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 5.4e-06 55.1 165 33.9
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 5.4e-06 55.1 161 34.2
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 7.0e-06 54.7 153 35.3
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 7.0e-06 54.7 155 42.6
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 9.2e-06 54.3 47 63.8
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 9.2e-06 54.3 172 44.8


User provided reference genes

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