Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 4.4e-144 514.6 262 100.0
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 1.6e-101 373.2 215 89.8
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 7.7e-96 354.4 217 84.3
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 4.8e-90 335.1 214 80.8
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 3.2e-86 322.4 226 76.5
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 3.2e-86 322.4 214 78.0
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 9.1e-81 304.3 214 76.2
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 1.5e-80 303.5 213 74.6
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 2.0e-80 303.1 216 75.5
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 4.2e-78 295.4 230 69.1
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 2.0e-75 286.6 217 68.7
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 1.0e-63 247.7 218 61.0
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 2.3e-55 219.9 228 52.2
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 2.5e-54 216.5 237 52.3
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 4.2e-54 215.7 214 52.8
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 3.0e-52 209.5 217 53.9
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 8.9e-52 208.0 224 52.7
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 2.0e-51 206.8 216 52.8
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 2.0e-51 206.8 216 52.8
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 3.4e-51 206.1 216 52.8
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 5.7e-51 205.3 220 52.3
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 1.3e-50 204.1 235 51.9
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 1.3e-50 204.1 224 49.6
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 3.7e-50 202.6 225 52.0
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 1.1e-49 201.1 219 51.1
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.1e-49 201.1 219 51.6
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 1.8e-49 200.3 229 49.3
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 4.1e-49 199.1 222 50.5
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 9.2e-49 198.0 221 49.8
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 9.2e-49 198.0 222 51.8
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 3.5e-48 196.1 219 49.8
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 4.5e-48 195.7 223 51.6
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 7.8e-48 194.9 212 50.9
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 1.3e-47 194.1 224 48.7
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 5.0e-47 192.2 227 47.1
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 5.0e-47 192.2 222 50.9
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 5.0e-47 192.2 215 52.1
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 5.0e-47 192.2 224 47.8
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 6.6e-47 191.8 226 49.1
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 4.3e-46 189.1 211 50.7
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 4.3e-46 189.1 220 47.7
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 7.3e-46 188.3 236 47.5
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 7.3e-46 188.3 217 50.2
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 7.3e-46 188.3 216 51.9
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 9.5e-46 188.0 216 49.1
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 9.5e-46 188.0 221 48.4
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 9.5e-46 188.0 220 47.7
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 1.6e-45 187.2 216 50.0
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 1.6e-45 187.2 216 50.0
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 2.8e-45 186.4 224 49.1
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 8.0e-45 184.9 226 49.1
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 1.4e-44 184.1 214 49.1
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 1.8e-44 183.7 218 49.1
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 3.1e-44 183.0 209 50.2
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 6.8e-44 181.8 220 48.2
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 8.9e-44 181.4 214 49.5
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 8.9e-44 181.4 220 47.7
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.2e-43 181.0 215 49.3
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 2.0e-43 180.3 218 48.2
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.6e-43 179.9 217 49.8
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 5.8e-43 178.7 226 45.6
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 9.8e-43 177.9 215 48.8
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 2.2e-42 176.8 219 49.8
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 6.4e-42 175.3 229 48.0
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.4e-41 174.1 224 46.0
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 2.4e-41 173.3 218 47.2
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 2.4e-41 173.3 223 46.2
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 5.4e-41 172.2 229 45.9
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 7.0e-41 171.8 198 49.0
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 1.6e-40 170.6 220 47.3
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 4.6e-40 169.1 217 45.6
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 4.6e-40 169.1 268 41.4
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 7.8e-40 168.3 226 42.5
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 3.0e-39 166.4 119 75.6
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 3.0e-39 166.4 172 49.4
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 8.6e-39 164.9 231 46.8
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 1.1e-38 164.5 218 46.3
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 1.5e-38 164.1 223 48.0
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.5e-38 164.1 182 48.4
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 3.3e-38 162.9 228 42.5
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 7.3e-38 161.8 119 75.6
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 2.8e-37 159.8 224 44.2
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 4.7e-37 159.1 221 43.4
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 8.0e-37 158.3 230 44.3
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 2.3e-36 156.8 227 47.1
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 8.9e-36 154.8 209 41.6
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 1.5e-35 154.1 231 42.4
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 2.9e-34 149.8 217 41.5
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 6.4e-34 148.7 224 42.4
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 1.4e-33 147.5 229 41.9
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 1.4e-33 147.5 217 45.2
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 4.1e-33 146.0 100 75.0
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 1.7e-31 140.6 222 39.6
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 3.0e-31 139.8 171 49.1
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 1.9e-30 137.1 218 39.9
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 1.9e-30 137.1 225 39.6
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 5.6e-30 135.6 90 74.4
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 9.5e-30 134.8 221 36.7
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 9.5e-30 134.8 222 37.8
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 2.8e-29 133.3 315 35.2
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 6.2e-29 132.1 127 54.3
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 4.0e-28 129.4 230 37.8
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 1.5e-27 127.5 208 39.4
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 3.4e-27 126.3 129 48.8
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.9e-25 120.6 170 44.1
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 3.2e-25 119.8 227 33.5
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 4.1e-25 119.4 229 33.6
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 2.7e-24 116.7 221 33.0
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 1.5e-22 110.9 140 42.9
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 2.2e-18 97.1 240 30.0
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.4e-17 94.4 255 29.0
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 4.2e-17 92.8 235 29.8
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 5.3e-12 75.9 54 63.0
C04p24790 Brassica napus HOM05D011583 ORTHO05D041434 2.9e-10 70.1 73 58.9
BolC4t23983H Brassica oleracea HOM05D011583 ORTHO05D041434 2.9e-10 70.1 73 58.9
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 7.1e-09 65.5 114 39.5
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 2.7e-08 63.5 86 48.8
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 3.9e-07 59.7 99 33.3
Cre16.g675861 Chlamydomonas reinhardtii HOM05D000984 ORTHO05D001096 1.5e-06 57.8 85 35.3
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 1.5e-06 57.8 49 55.1
A08p10170 Brassica napus HOM05D011583 ORTHO05D017584 1.9e-06 57.4 67 49.3
A09p42480 Brassica napus HOM05D011583 ORTHO05D017584 1.9e-06 57.4 67 49.3
BraA08t33016Z Brassica rapa HOM05D011583 ORTHO05D017584 1.9e-06 57.4 67 49.3
BraA09t39725Z Brassica rapa HOM05D011583 ORTHO05D017584 1.9e-06 57.4 67 49.3
BcaC07g37557 Brassica carinata HOM05D011583 ORTHO05D007588 3.3e-06 56.6 38 78.9
BcaB03g16564 Brassica carinata HOM05D011583 ORTHO05D007588 7.3e-06 55.5 44 63.6
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 7.3e-06 55.5 77 39.0


User provided reference genes

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