Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 2.2e-210 735.7 470 100.0
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 2.1e-197 692.6 470 93.2
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 7.6e-187 657.5 474 88.0
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.0e-175 620.5 475 87.6
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.3e-175 620.2 476 81.5
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 4.3e-174 615.1 471 85.1
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 4.3e-174 615.1 480 82.5
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 4.3e-174 615.1 478 83.5
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 4.8e-173 611.7 474 84.0
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 9.3e-169 597.4 474 82.7
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 4.6e-168 595.1 480 80.8
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 1.8e-167 593.2 488 78.1
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 1.8e-167 593.2 488 78.1
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 6.2e-165 584.7 480 79.2
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 2.7e-160 569.3 477 80.3
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 4.3e-158 562.0 419 88.8
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 1.8e-156 556.6 484 81.2
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 5.9e-155 551.6 477 78.8
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 2.2e-149 533.1 479 77.9
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.5e-123 445.7 484 63.8
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 2.7e-120 436.4 407 66.6
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.6e-120 436.0 488 60.5
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.3e-119 433.3 488 63.1
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 8.8e-119 431.4 420 66.0
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 2.6e-118 429.9 477 67.1
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 5.7e-118 428.7 490 62.0
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 7.5e-118 428.3 407 69.5
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 7.5e-118 428.3 407 70.0
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.3e-117 427.6 412 68.0
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.7e-117 427.2 478 59.6
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 3.7e-117 426.0 426 67.6
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 4.1e-116 422.5 417 65.9
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 7.0e-116 421.8 493 59.0
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 9.1e-116 421.4 490 57.8
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 1.2e-115 421.0 495 56.6
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 2.0e-115 420.2 488 63.7
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 2.0e-115 420.2 422 65.9
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 4.5e-115 419.1 484 63.2
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 4.5e-115 419.1 459 63.8
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 7.7e-115 418.3 411 67.2
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 7.7e-115 418.3 416 64.9
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.0e-114 417.9 411 67.2
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.0e-114 417.9 423 67.8
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.3e-114 417.5 461 60.3
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 2.3e-114 416.8 483 57.3
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 2.3e-114 416.8 427 63.2
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 5.0e-114 415.6 407 70.0
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.6e-114 415.2 411 64.7
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 6.6e-114 415.2 427 63.7
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 8.6e-114 414.8 416 64.9
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 1.1e-113 414.5 408 62.5
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.5e-113 414.1 484 62.2
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 5.5e-113 412.1 422 58.5
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 7.2e-113 411.8 422 61.8
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 9.5e-113 411.4 483 63.4
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.6e-112 410.6 419 63.7
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.1e-112 410.2 428 62.4
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.1e-112 410.2 441 57.8
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 2.8e-112 409.8 494 61.7
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 3.6e-112 409.5 412 64.8
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 4.7e-112 409.1 428 59.3
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 1.0e-111 407.9 489 61.1
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.4e-111 407.5 419 63.0
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 3.0e-111 406.4 500 56.6
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 1.5e-110 404.1 441 60.1
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 1.5e-110 404.1 423 65.5
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 2.0e-110 403.7 469 58.2
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 9.8e-110 401.4 404 68.3
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.1e-108 397.9 417 65.2
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 7.0e-108 395.2 414 61.4
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 1.2e-107 394.4 378 68.5
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 2.7e-107 393.3 392 66.8
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 5.9e-107 392.1 431 60.6
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.3e-106 391.0 483 59.6
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.8e-103 380.6 411 63.5
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 8.9e-103 378.3 408 65.0
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 5.8e-102 375.6 407 61.9
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 3.7e-101 372.9 433 57.7
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.4e-100 370.2 410 61.5
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 4.1e-100 369.4 433 58.2
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.2e-99 367.9 379 63.9
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 6.6e-98 362.1 452 55.8
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 5.6e-97 359.0 434 58.1
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 4.7e-96 355.9 474 52.3
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 4.7e-96 355.9 420 61.4
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 1.4e-95 354.4 477 62.1
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 2.2e-93 347.1 606 43.7
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.4e-92 344.4 405 62.7
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 5.1e-90 335.9 427 55.3
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 2.3e-87 327.0 375 60.0
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 4.9e-85 319.3 418 55.5
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.1e-84 316.2 471 50.1
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.1e-84 316.2 471 50.1
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 2.3e-82 310.5 202 83.2
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 4.3e-81 306.2 479 47.8
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 7.3e-81 305.4 400 51.5
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 2.1e-80 303.9 371 60.4
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.4e-79 300.4 408 54.4
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.8e-79 298.9 281 64.1
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 1.5e-78 297.7 284 66.5
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 2.9e-77 293.5 293 68.3
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 5.1e-74 282.7 279 58.4
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 3.6e-72 276.6 350 66.9
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 8.1e-72 275.4 320 65.0
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 2.2e-69 267.3 269 65.1
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 2.3e-66 257.3 282 59.2
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 3.0e-66 256.9 337 51.9
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 8.1e-64 248.8 297 55.9
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 5.3e-63 246.1 324 55.9
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 1.2e-62 245.0 404 45.5
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 4.9e-61 239.6 318 57.5
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 7.1e-60 235.7 375 59.5
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.3e-56 224.9 627 37.0
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 4.8e-56 223.0 382 47.6
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 9.3e-44 182.2 491 43.4
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.8e-42 177.9 244 61.9
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 4.2e-36 156.8 103 78.6
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 1.4e-34 151.8 99 76.8
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 5.3e-31 139.8 87 80.5
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-29 135.6 119 66.4
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.3e-29 135.2 358 31.3
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-25 122.1 95 92.6
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.1e-23 115.5 199 44.7
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 3.5e-22 110.5 97 85.6
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 1.3e-21 108.6 80 71.2
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 3.8e-21 107.1 94 61.7
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.9e-20 104.8 52 88.5
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 5.5e-20 103.2 107 73.8
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 4.0e-18 97.1 110 51.8
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.3e-16 92.0 84 60.7
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.6e-14 84.3 77 61.0
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.7e-14 82.8 96 54.2
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-13 82.4 63 68.3
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 1.6e-11 75.1 100 48.0
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 8.8e-10 69.3 43 81.4
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.5e-09 66.2 87 46.0
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 9.8e-09 65.9 140 30.0


User provided reference genes

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