Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1505.0 833 100.0
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1458.7 834 97.2
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1427.9 833 94.7
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1407.1 835 91.4
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1406.0 833 91.8
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1371.3 834 88.2
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1359.4 834 87.4
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1353.6 829 87.8
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1346.3 829 87.3
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1340.9 834 87.3
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1333.9 834 87.2
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1332.8 834 87.1
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1327.0 836 87.0
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1317.4 835 86.8
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 0.0e+00 1285.0 733 91.0
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1221.8 690 90.6
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1219.1 786 83.0
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 0.0e+00 1142.9 623 93.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 829 73.5
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 834 74.1
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1118.6 835 72.7
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1117.4 830 71.8
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1116.3 832 75.4
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1113.6 798 73.3
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1112.1 790 73.9
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1110.9 848 71.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1107.4 827 72.1
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1107.4 833 74.4
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1107.4 829 71.9
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 828 71.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1102.4 833 74.7
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1100.9 833 73.1
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1100.5 835 69.9
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 841 71.7
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 826 71.3
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 833 74.5
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 835 69.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1096.6 830 69.6
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 833 74.8
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1094.3 835 69.1
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1090.9 826 70.1
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1090.5 826 71.9
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1087.8 937 65.0
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1084.7 825 69.5
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 825 69.3
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 832 71.8
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 828 68.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 833 70.1
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 836 69.9
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1080.1 836 70.3
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1078.2 837 70.7
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 825 69.1
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1076.6 836 69.5
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1075.1 825 68.8
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 5.7e-312 1074.7 825 68.8
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 5.7e-312 1074.3 828 72.6
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 830 68.2
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 6.8e-311 1070.5 831 68.7
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 1.6e-309 1065.8 870 69.5
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 1.6e-309 1065.8 831 68.5
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 4.8e-309 1064.3 828 71.6
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 6.2e-309 1063.9 827 67.4
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 3.1e-308 1061.6 832 68.5
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 5.3e-308 1060.8 831 68.2
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 6.9e-308 1060.4 755 72.6
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 3.4e-307 1058.1 827 68.7
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 1.7e-306 1055.8 830 69.5
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 4.9e-306 1054.3 756 71.6
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 1.4e-305 1052.7 827 67.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 1.4e-305 1052.7 755 71.5
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 2.3e-303 1045.4 797 69.6
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 1.1e-302 1043.1 825 67.0
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.5e-302 1042.0 830 70.0
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 4.3e-302 1041.2 829 65.9
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 4.3e-302 1041.2 831 69.1
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 3.7e-301 1038.1 828 68.5
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.3e-298 1029.6 828 69.6
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 2.5e-297 1025.4 831 67.3
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 784 68.1
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.1e-296 1022.3 759 70.0
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 2.7e-296 1021.9 836 67.2
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 6.0e-296 1020.8 834 66.5
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 2.3e-295 1018.8 784 68.0
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.9e-295 1018.1 757 69.9
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 4.3e-294 1014.6 829 67.2
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.1e-292 1010.0 841 64.2
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.8e-292 1009.2 828 64.9
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 2.2e-290 1002.3 788 64.8
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 2.1e-288 995.7 887 62.2
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.8e-287 992.6 828 64.1
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 2.2e-285 985.7 795 65.2
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 9.4e-281 970.3 667 72.7
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.4e-279 966.5 827 62.3
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.7e-279 964.1 825 63.4
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.6e-275 952.2 901 59.5
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 4.5e-275 951.4 825 62.4
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 7.4e-270 934.1 827 59.9
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 3.1e-268 928.7 830 60.4
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.2e-265 918.7 760 66.1
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.7e-263 911.0 823 58.4
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 1.2e-262 910.2 755 63.7
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 9.7e-262 907.1 924 58.0
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.7e-261 906.4 647 70.9
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 5.3e-260 901.4 647 70.6
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.8e-253 879.0 633 71.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.8e-253 879.0 784 56.9
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 5.7e-246 854.7 835 56.8
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 8.6e-242 840.9 568 73.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 8.6e-242 840.9 784 55.0
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.4e-236 821.6 785 53.9
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 1.2e-227 793.9 787 52.0
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.6e-216 756.9 764 50.9
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 2.9e-213 746.1 828 56.0
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 4.3e-201 705.7 841 52.0
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.3e-184 651.0 426 76.3
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 2.9e-149 533.5 478 61.7
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.0e-141 508.4 443 62.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 5.9e-134 482.6 322 77.6
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 3.4e-121 440.3 787 34.6
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 9.8e-121 438.7 368 74.5
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 4.1e-119 433.3 733 34.4
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.8e-114 417.9 308 66.9
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.1e-107 394.4 278 70.9
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.0e-101 375.6 394 54.3
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 4.6e-94 350.1 854 30.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.5e-76 291.2 278 57.9
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.4e-65 254.2 305 49.2
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.7e-64 251.9 312 49.4
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.3e-58 230.3 131 90.1
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 9.4e-47 193.0 140 70.7
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.2e-41 176.0 125 71.2
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.9e-39 168.7 142 66.2
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.2e-31 140.2 152 47.4
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.2e-31 140.2 152 47.4
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-29 136.0 156 52.6
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.2e-27 128.6 110 64.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-22 112.8 70 85.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.7e-09 68.6 133 40.6
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 2.5e-07 62.0 61 50.8


User provided reference genes

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