Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.0e-28 129.4 68 100.0
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.3e-28 128.3 68 98.5
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 4.1e-25 117.5 68 92.6
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 1.3e-23 112.5 68 91.2
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 1.3e-23 112.5 68 91.2
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 2.2e-23 111.7 68 86.8
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 6.5e-23 110.2 68 88.2
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 4.2e-22 107.5 68 88.2
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 9.4e-22 106.3 68 86.8
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 9.4e-22 106.3 68 86.8
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 2.1e-21 105.1 68 85.3
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 3.6e-21 104.4 68 85.3
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 3.6e-21 104.4 68 85.3
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 3.6e-21 104.4 68 85.3
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 3.6e-21 104.4 68 85.3
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 6.1e-21 103.6 68 85.3
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 6.1e-21 103.6 68 85.3
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 1.4e-20 102.4 69 85.5
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 1.4e-20 102.4 68 83.8
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 1.8e-20 102.1 68 82.4
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 1.8e-20 102.1 68 82.4
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 1.8e-20 102.1 68 82.4
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 3.0e-20 101.3 68 82.4
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 9.4e-14 79.7 68 72.1
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 2.1e-13 78.6 74 67.6
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 2.1e-13 78.6 62 72.6
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 4.7e-13 77.4 62 72.6
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 4.7e-13 77.4 62 72.6
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 4.7e-13 77.4 62 72.6
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 1.4e-12 75.9 68 67.6
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 3.0e-12 74.7 73 64.4
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 3.0e-12 74.7 63 69.8
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 3.0e-12 74.7 73 64.4
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.0e-12 74.3 73 64.4
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 8.8e-12 73.2 73 64.4
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 8.8e-12 73.2 65 67.7
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 8.8e-12 73.2 62 69.4
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 1.2e-11 72.8 65 67.7
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 1.2e-11 72.8 65 67.7
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 2.6e-11 71.6 62 67.7
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 2.6e-11 71.6 62 67.7
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 2.6e-11 71.6 62 67.7
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 1.3e-10 69.3 69 62.3
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 2.2e-10 68.6 66 62.1
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 2.8e-10 68.2 71 63.4
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 2.8e-10 68.2 53 71.7
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 2.8e-10 68.2 61 63.9
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 3.7e-10 67.8 68 58.8
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 6.3e-10 67.0 74 63.5
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 6.3e-10 67.0 74 63.5
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 6.3e-10 67.0 67 59.7
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 1.1e-09 66.2 70 61.4
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 1.8e-09 65.5 74 62.2
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 5.4e-09 63.9 74 62.2
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 5.4e-09 63.9 74 62.2
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 5.4e-09 63.9 74 62.2
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 5.4e-09 63.9 65 61.5
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 5.4e-09 63.9 74 58.1
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 7.0e-09 63.5 71 57.7
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.2e-08 62.8 63 60.3
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.6e-08 62.4 63 58.7
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 3.5e-08 61.2 57 59.6
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 5.9e-08 60.5 54 64.8
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 7.7e-08 60.1 63 60.3
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 1.0e-07 59.7 59 64.4
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 1.3e-07 59.3 64 57.8
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 1.3e-07 59.3 68 54.4
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 2.3e-07 58.5 75 52.0
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 2.9e-07 58.2 75 52.0
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 2.9e-07 58.2 74 51.4
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 3.8e-07 57.8 74 51.4
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 5.0e-07 57.4 76 52.6
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 6.6e-07 57.0 69 56.5
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 6.6e-07 57.0 69 56.5
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 6.6e-07 57.0 68 57.4
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 6.6e-07 57.0 68 54.4
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 8.6e-07 56.6 66 57.6
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 1.1e-06 56.2 58 67.2
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 1.1e-06 56.2 67 55.2
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 1.5e-06 55.8 72 55.6
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 1.9e-06 55.5 66 57.6
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.9e-06 55.5 66 51.5
TPR.G27729 Trifolium pratense HOM05D007313 ORTHO05D005299 1.9e-06 55.5 59 54.2
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 2.5e-06 55.1 69 55.1
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 3.3e-06 54.7 58 58.6
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 52.9
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 3.3e-06 54.7 67 53.7
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 3.3e-06 54.7 67 53.7
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 7.2e-06 53.5 64 53.1


User provided reference genes

Program Settings