Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 1.6e-26 122.1 64 100.0
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 1.6e-26 122.1 64 100.0
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 3.5e-26 120.9 64 98.4
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 3.5e-26 120.9 64 98.4
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 3.5e-26 120.9 64 98.4
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 2.9e-25 117.9 64 96.9
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 2.9e-25 117.9 64 96.9
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 3.6e-23 110.9 64 89.1
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 1.8e-22 108.6 64 87.5
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 9.8e-21 102.8 64 79.7
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 6.4e-20 100.1 65 81.5
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 1.1e-19 99.4 64 78.1
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.4e-19 99.0 64 76.6
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 1.8e-19 98.6 64 78.1
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 2.4e-19 98.2 64 76.6
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 4.1e-19 97.4 65 78.5
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 5.4e-19 97.1 64 73.4
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 7.0e-19 96.7 64 73.4
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 75.0
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 75.0
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 1.2e-18 95.9 62 75.8
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 1.2e-18 95.9 62 77.4
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 1.2e-18 95.9 64 75.0
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.2e-18 95.9 65 78.5
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 1.6e-18 95.5 64 73.4
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 1.6e-18 95.5 65 78.5
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 1.6e-18 95.5 64 75.0
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 1.6e-18 95.5 64 71.9
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 2.0e-18 95.1 55 83.6
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 2.7e-18 94.7 60 76.7
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 2.7e-18 94.7 65 76.9
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 2.7e-18 94.7 64 71.9
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 2.7e-18 94.7 64 70.3
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 2.7e-18 94.7 64 71.9
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 71.9
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 71.9
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 73.4
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 5.9e-18 93.6 64 70.3
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 5.9e-18 93.6 64 71.9
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 7.8e-18 93.2 58 79.3
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 7.8e-18 93.2 64 73.4
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 7.8e-18 93.2 64 71.9
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 7.8e-18 93.2 64 71.9
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 7.8e-18 93.2 64 71.9
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 1.0e-17 92.8 64 71.9
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 1.0e-17 92.8 64 71.9
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 1.7e-17 92.0 64 71.9
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 2.3e-17 91.7 64 70.3
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 3.9e-17 90.9 55 81.8
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 3.9e-17 90.9 55 81.8
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 3.9e-17 90.9 58 77.6
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 3.9e-17 90.9 65 73.8
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 5.0e-17 90.5 62 71.0
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 6.6e-17 90.1 64 68.8
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 6.6e-17 90.1 58 74.1
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 8.6e-17 89.7 58 75.9
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 8.6e-17 89.7 55 78.2
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 8.6e-17 89.7 63 73.0
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.5e-16 89.0 65 70.8
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 1.9e-16 88.6 65 72.3
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 1.9e-16 88.6 65 72.3
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.9e-16 88.6 62 69.4
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.9e-16 88.6 59 72.9
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 2.5e-16 88.2 62 67.7
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 2.5e-16 88.2 62 67.7
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 2.5e-16 88.2 64 68.8
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.3e-16 87.8 58 72.4
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 4.3e-16 87.4 60 68.3
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 67.2
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 5.6e-16 87.0 64 67.2
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 7.3e-16 86.7 64 67.2
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 9.5e-16 86.3 55 76.4
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 1.2e-15 85.9 64 67.2
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 1.6e-15 85.5 64 78.1
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 1.6e-15 85.5 58 70.7
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 3.6e-15 84.3 64 65.6
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 1.4e-14 82.4 65 64.6
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 2.3e-14 81.6 71 59.2
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 1.2e-13 79.3 62 59.7
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.5e-13 79.0 84 53.6
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 2.0e-13 78.6 58 62.1
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 2.4e-11 71.6 62 54.8
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 1.3e-09 65.9 35 85.7
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 6.6e-09 63.5 36 77.8
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 8.6e-09 63.2 35 77.1
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 1.1e-08 62.8 55 63.6
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 2.5e-08 61.6 49 61.2
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 2.5e-08 61.6 39 76.9
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 3.1e-06 54.7 36 77.8


User provided reference genes

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