Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 4.4e-52 207.6 99 100.0
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 9.7e-52 206.5 99 99.0
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 4.1e-50 201.1 95 98.9
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 1.2e-49 199.5 96 96.9
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 6.5e-48 193.7 96 94.8
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 4.0e-45 184.5 95 90.5
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 6.8e-45 183.7 96 92.7
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 6.8e-45 183.7 97 91.8
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-44 182.6 96 91.7
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-44 182.6 96 91.7
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-44 182.6 96 91.7
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 5.7e-44 180.6 96 91.7
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.3e-43 179.5 94 91.5
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.3e-43 179.5 94 91.5
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.3e-43 179.5 94 91.5
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.3e-43 179.5 94 91.5
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 1.3e-43 179.5 94 92.6
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 6.3e-43 177.2 97 85.6
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 2.9e-40 168.3 92 81.5
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 5.5e-39 164.1 91 80.2
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 7.2e-39 163.7 91 80.2
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 7.2e-39 163.7 91 80.2
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 9.5e-39 163.3 87 82.8
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.0e-37 159.8 96 75.0
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 1.8e-37 159.1 90 74.4
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 5.2e-37 157.5 88 79.5
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 6.8e-37 157.1 95 74.7
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 8.8e-37 156.8 95 73.7
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 8.8e-37 156.8 87 79.3
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 1.2e-36 156.4 90 75.6
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 1.5e-36 156.0 92 73.9
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.5e-36 156.0 97 72.2
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 2.0e-36 155.6 85 80.0
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 2.0e-36 155.6 97 75.3
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 2.0e-36 155.6 86 79.1
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 2.0e-36 155.6 86 79.1
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.6e-36 155.2 90 75.6
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.6e-36 155.2 90 76.7
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 3.4e-36 154.8 90 75.6
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 3.4e-36 154.8 88 77.3
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 5.7e-36 154.1 90 74.4
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 7.5e-36 153.7 87 77.0
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 7.5e-36 153.7 94 74.5
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 7.5e-36 153.7 95 72.6
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 9.8e-36 153.3 95 72.6
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.3e-35 152.9 90 75.6
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.3e-35 152.9 90 75.6
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 1.3e-35 152.9 90 73.3
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.3e-35 152.9 84 78.6
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 1.7e-35 152.5 90 73.3
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 1.7e-35 152.5 90 75.6
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 2.2e-35 152.1 90 74.4
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.2e-35 152.1 90 74.4
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 2.2e-35 152.1 85 78.8
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 2.8e-35 151.8 86 76.7
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 3.7e-35 151.4 85 76.5
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 3.7e-35 151.4 86 74.4
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 4.9e-35 151.0 94 73.4
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 4.9e-35 151.0 87 73.6
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 6.3e-35 150.6 83 78.3
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 6.3e-35 150.6 83 78.3
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 6.3e-35 150.6 83 78.3
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 6.3e-35 150.6 83 78.3
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 6.3e-35 150.6 85 77.6
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 8.3e-35 150.2 83 77.1
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 8.3e-35 150.2 86 76.7
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 1.1e-34 149.8 86 75.6
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 1.1e-34 149.8 87 73.6
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.4e-34 149.4 85 76.5
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 1.8e-34 149.1 85 75.3
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 3.1e-34 148.3 85 75.3
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 3.1e-34 148.3 94 70.2
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 3.1e-34 148.3 92 72.8
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 3.1e-34 148.3 84 76.2
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 4.1e-34 147.9 80 81.2
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 4.1e-34 147.9 92 72.8
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 5.4e-34 147.5 84 73.8
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 7.0e-34 147.1 90 73.3
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 7.0e-34 147.1 94 70.2
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 9.2e-34 146.7 94 75.5
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 9.2e-34 146.7 89 71.9
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.0e-33 145.6 84 75.0
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 2.7e-33 145.2 88 69.3
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 3.5e-33 144.8 93 71.0
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 4.5e-33 144.4 83 78.3
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 4.5e-33 144.4 83 78.3
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 4.5e-33 144.4 84 76.2
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 5.9e-33 144.1 84 73.8
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 5.9e-33 144.1 84 73.8
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 7.8e-33 143.7 91 70.3
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.0e-32 143.3 88 76.1
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 1.3e-32 142.9 91 71.4
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 1.7e-32 142.5 84 72.6
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.7e-32 142.5 91 70.3
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.7e-32 142.5 95 71.6
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.3e-32 142.1 79 77.2
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 2.3e-32 142.1 85 76.5
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.3e-32 142.1 86 70.9
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.3e-32 142.1 86 70.9
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 2.9e-32 141.7 81 74.1
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 3.8e-32 141.4 94 64.9
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.6e-32 140.6 91 70.3
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 8.6e-32 140.2 81 77.8
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 1.5e-31 139.4 93 67.7
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 1.9e-31 139.0 95 71.6
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 5.6e-31 137.5 84 70.2
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 9.5e-31 136.7 87 69.0
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 9.5e-31 136.7 94 68.1
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 9.5e-31 136.7 93 66.7
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 2.1e-30 135.6 93 68.8
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 3.6e-30 134.8 79 73.4
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 3.6e-30 134.8 83 69.9
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 1.7e-27 125.9 86 66.3
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 7.0e-26 120.6 84 64.3
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 3.5e-25 118.2 84 61.9
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 3.0e-24 115.2 72 66.7
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.3e-23 111.3 70 70.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.3e-23 111.3 70 70.0
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 8.3e-19 97.1 80 50.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 8.3e-19 97.1 82 48.8
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.4e-18 96.3 64 68.8
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 6.6e-16 87.4 78 48.7
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 9.5e-15 83.6 87 59.8
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 8.1e-14 80.5 78 43.6
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 1.7e-11 72.8 85 38.8
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 1.1e-10 70.1 42 64.3
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 2.3e-08 62.4 41 75.6
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 7.3e-07 57.4 36 69.4
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 1.2e-06 56.6 36 66.7
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-06 55.8 56 44.6
Aa31LG3G5740 Aethionema arabicum HOM05D000002 ORTHO05D002065 2.8e-06 55.5 44 68.2


User provided reference genes

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