Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.5e-77 292.0 142 100.0
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 6.4e-73 277.3 142 93.0
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.1e-72 273.9 142 91.5
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 5.1e-70 267.7 142 89.4
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 7.4e-69 263.8 142 90.1
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 9.6e-69 263.5 191 72.3
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.3e-68 263.1 142 88.0
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.3e-68 263.1 142 88.0
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.3e-68 263.1 142 88.0
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.8e-68 261.9 142 85.9
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.8e-68 261.2 142 87.3
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.8e-68 261.2 142 87.3
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 86.6
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 87.3
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 86.6
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 87.3
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 86.6
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 8.2e-68 260.4 142 85.9
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.1e-67 260.0 142 86.6
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-67 260.0 142 86.6
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-67 260.0 142 86.6
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.4e-67 259.6 142 86.6
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-67 259.6 142 86.6
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-67 259.2 142 86.6
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 7.6e-66 253.8 142 84.5
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.0e-65 253.4 142 82.4
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.2e-65 252.3 142 84.5
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.8e-65 251.5 142 83.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.8e-65 251.5 142 83.1
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.8e-65 251.5 142 83.8
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 4.9e-65 251.1 142 81.7
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.7e-61 237.7 142 77.5
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 73.2
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.8e-59 232.6 142 73.2
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 72.5
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 73.2
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 4.1e-59 231.5 140 75.0
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 73.9
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 3.4e-58 228.4 142 71.8
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 71.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 71.1
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 72.5
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 71.8
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 70.4
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 71.1
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 71.1
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.9e-57 225.3 141 73.0
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 2.9e-57 225.3 141 70.9
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 73.2
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 73.9
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.4e-56 223.0 139 72.7
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.4e-56 223.0 141 70.9
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 69.7
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 70.4
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 69.7
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 69.0
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 73.2
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 70.4
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 73.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 72.5
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 68.3
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 69.0
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 69.7
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 69.7
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 68.3
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 71.1
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 69.7
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.6e-55 218.4 140 70.0
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 71.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 6.1e-55 217.6 142 71.1
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.9e-55 217.2 140 69.3
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 7.9e-55 217.2 141 70.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 71.1
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.8e-54 216.1 142 68.3
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.8e-54 216.1 140 70.7
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.8e-54 216.1 141 68.8
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.3e-54 215.7 142 68.3
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 3.0e-54 215.3 141 68.8
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 69.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 6.7e-54 214.2 140 70.0
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.9e-53 212.6 141 68.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.9e-53 212.6 140 67.9
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.5e-53 212.2 138 69.6
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.3e-53 211.8 141 68.8
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.3e-53 211.8 141 68.1
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.3e-53 211.5 141 68.8
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.7e-53 211.1 142 66.9
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.7e-53 211.1 142 66.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 9.7e-53 210.3 135 70.4
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.2e-52 209.1 142 67.6
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 67.6
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 3.7e-52 208.4 140 68.6
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 8.2e-52 207.2 141 66.0
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.1e-51 206.8 139 67.6
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.1e-51 206.8 137 67.2
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 66.7
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.4e-51 205.7 141 66.7
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.4e-51 205.7 141 66.7
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 6.9e-51 204.1 142 66.2
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.9e-51 204.1 158 61.4
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 62.7
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 9.1e-51 203.8 141 67.4
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 2.0e-50 202.6 141 66.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.0e-50 202.6 141 67.4
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 66.9
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.6e-50 202.2 140 62.9
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.4e-50 201.8 170 57.6
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 3.4e-50 201.8 141 66.0
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 62.9
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.9e-50 201.1 142 71.8
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.0e-49 200.3 140 62.9
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 2.2e-49 199.1 193 53.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 2.2e-49 199.1 193 53.4
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.8e-49 198.4 140 62.1
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 5.0e-49 198.0 137 70.1
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 6.5e-49 197.6 138 65.2
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.9e-48 196.1 142 62.7
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.9e-48 196.1 143 65.7
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 65.5
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 5.5e-48 194.5 136 61.8
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 5.5e-48 194.5 142 64.1
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 64.8
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 64.1
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 6.1e-47 191.0 138 63.0
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 7.9e-47 190.7 142 62.0
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.9e-47 190.7 140 63.6
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.4e-46 189.9 142 61.3
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 63.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.1e-45 186.8 117 74.4
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 1.1e-45 186.8 140 64.3
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.1e-45 186.8 142 61.3
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.0e-45 186.0 142 60.6
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.6e-45 185.7 142 64.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 9.7e-45 183.7 135 63.0
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 2.2e-44 182.6 144 61.1
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 6.3e-44 181.0 143 62.2
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.8e-43 179.5 157 56.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.8e-43 179.5 142 60.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.0e-41 173.7 138 59.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.5e-41 171.0 175 50.3
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 8.8e-38 160.6 140 53.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 7.4e-37 157.5 108 68.5
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 9.7e-37 157.1 141 54.6
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.3e-36 156.8 139 55.4
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.8e-36 155.6 126 60.3
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 6.3e-36 154.5 137 53.3
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.4e-35 153.3 137 52.6
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.1e-35 151.8 141 53.9
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 4.1e-35 151.8 285 33.7
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 5.3e-35 151.4 142 52.8
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-32 143.7 129 53.5
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-32 143.3 129 53.5
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-29 133.7 120 53.3
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.3e-25 120.2 73 72.6
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 3.8e-25 118.6 127 45.7
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 2.7e-23 112.5 115 53.0
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.0e-22 109.0 80 63.8
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 4.0e-22 108.6 80 63.8
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.2e-20 102.8 67 67.2
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-20 101.7 109 49.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-20 101.7 109 49.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-20 101.7 109 49.5
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.4e-19 99.4 112 52.7
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 7.0e-19 97.8 67 65.7
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 7.0e-19 97.8 123 43.1
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 5.9e-18 94.7 59 69.5
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 5.9e-18 94.7 59 69.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 2.3e-17 92.8 87 54.0
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 5.0e-17 91.7 115 49.6
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 5.0e-17 91.7 117 40.2
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 4.0e-14 82.0 77 51.9
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 4.4e-13 78.6 68 51.5
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 5.7e-13 78.2 77 48.1
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 4.1e-11 72.0 68 47.1
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.0e-10 69.7 42 73.8
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 1.0e-09 67.4 71 52.1
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 1.0e-09 67.4 32 90.6
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.3e-09 67.0 39 66.7
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.5e-08 62.8 38 73.7
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 4.3e-08 62.0 42 64.3
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 2.1e-07 59.7 108 35.2
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 8.0e-07 57.8 36 69.4
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.0e-06 57.4 34 70.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.4e-06 57.0 34 70.6
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 3.0e-06 55.8 34 67.6


User provided reference genes

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